Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ALG1L5P-201ENST00000482043 771 ntBASIC20.15■□□□□ 0.82
CCNA1P78396 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
CCNA1P78396 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.15■□□□□ 0.82
CCNA1P78396 AC004790.2-201ENST00000623588 572 ntBASIC20.15■□□□□ 0.82
CCNA1P78396 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.15■□□□□ 0.82
CCNA1P78396 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.15■□□□□ 0.82
CCNA1P78396 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.15■□□□□ 0.82
CCNA1P78396 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
CCNA1P78396 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.15■□□□□ 0.82
CCNA1P78396 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.15■□□□□ 0.82
CCNA1P78396 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCNA1P78396 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCNA1P78396 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCNA1P78396 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.14■□□□□ 0.81
CCNA1P78396 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.14■□□□□ 0.81
CCNA1P78396 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.14■□□□□ 0.81
CCNA1P78396 HTR5BP-201ENST00000430851 1154 ntBASIC20.14■□□□□ 0.81
CCNA1P78396 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.14■□□□□ 0.81
CCNA1P78396 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.14■□□□□ 0.81
CCNA1P78396 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.14■□□□□ 0.81
CCNA1P78396 AC018845.2-201ENST00000568326 409 ntBASIC20.14■□□□□ 0.81
CCNA1P78396 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
CCNA1P78396 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20.14■□□□□ 0.81
CCNA1P78396 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.14■□□□□ 0.81
CCNA1P78396 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC20.14■□□□□ 0.81
CCNA1P78396 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.14■□□□□ 0.81
CCNA1P78396 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.14■□□□□ 0.81
CCNA1P78396 AC010654.1-201ENST00000615722 808 ntBASIC20.14■□□□□ 0.81
CCNA1P78396 AL805961.1-202ENST00000641562 540 ntBASIC20.14■□□□□ 0.81
CCNA1P78396 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCNA1P78396 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.14■□□□□ 0.81
CCNA1P78396 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCNA1P78396 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCNA1P78396 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
CCNA1P78396 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.13■□□□□ 0.81
CCNA1P78396 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCNA1P78396 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCNA1P78396 MRPL20P1-201ENST00000400819 433 ntBASIC20.13■□□□□ 0.81
CCNA1P78396 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.13■□□□□ 0.81
CCNA1P78396 IGHV3-52-201ENST00000519770 353 ntBASIC20.13■□□□□ 0.81
CCNA1P78396 AC109462.3-201ENST00000573934 613 ntBASIC20.13■□□□□ 0.81
CCNA1P78396 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.13■□□□□ 0.81
CCNA1P78396 AC019129.2-201ENST00000609837 1235 ntBASIC20.13■□□□□ 0.81
CCNA1P78396 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCNA1P78396 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCNA1P78396 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCNA1P78396 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CCNA1P78396 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.13■□□□□ 0.81
CCNA1P78396 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCNA1P78396 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.13■□□□□ 0.81
CCNA1P78396 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CCNA1P78396 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.12■□□□□ 0.81
CCNA1P78396 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
CCNA1P78396 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.12■□□□□ 0.81
CCNA1P78396 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 STK19B-204ENST00000512515 211 ntBASIC20.12■□□□□ 0.81
CCNA1P78396 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CCNA1P78396 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 HCG11-201ENST00000411553 5696 ntBASIC20.12■□□□□ 0.81
CCNA1P78396 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CCNA1P78396 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CCNA1P78396 BX276092.7-203ENST00000637198 1536 ntBASIC20.12■□□□□ 0.81
CCNA1P78396 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNA1P78396 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNA1P78396 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.11■□□□□ 0.81
CCNA1P78396 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.11■□□□□ 0.81
CCNA1P78396 STK25P1-201ENST00000585406 838 ntBASIC20.11■□□□□ 0.81
CCNA1P78396 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.11■□□□□ 0.81
CCNA1P78396 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms