Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLRN1P58418 AC006116.8-202ENST00000587620 1550 ntBASIC15.93■□□□□ 0.14
CLRN1P58418 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLRN1P58418 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
CLRN1P58418 AL353692.3-201ENST00000407031 1396 ntBASIC15.93■□□□□ 0.14
CLRN1P58418 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CLRN1P58418 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLRN1P58418 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLRN1P58418 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CLRN1P58418 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.93■□□□□ 0.14
CLRN1P58418 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.93■□□□□ 0.14
CLRN1P58418 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.93■□□□□ 0.14
CLRN1P58418 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.93■□□□□ 0.14
CLRN1P58418 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC15.93■□□□□ 0.14
CLRN1P58418 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.93■□□□□ 0.14
CLRN1P58418 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.93■□□□□ 0.14
CLRN1P58418 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CLRN1P58418 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
CLRN1P58418 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLRN1P58418 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.93■□□□□ 0.14
CLRN1P58418 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CLRN1P58418 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC15.92■□□□□ 0.14
CLRN1P58418 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.92■□□□□ 0.14
CLRN1P58418 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
CLRN1P58418 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.92■□□□□ 0.14
CLRN1P58418 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.92■□□□□ 0.14
CLRN1P58418 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
CLRN1P58418 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC15.92■□□□□ 0.14
CLRN1P58418 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.92■□□□□ 0.14
CLRN1P58418 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.92■□□□□ 0.14
CLRN1P58418 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC15.92■□□□□ 0.14
CLRN1P58418 LTBR-211ENST00000543190 785 ntTSL 3 BASIC15.92■□□□□ 0.14
CLRN1P58418 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.92■□□□□ 0.14
CLRN1P58418 AC005332.3-201ENST00000589904 676 ntBASIC15.92■□□□□ 0.14
CLRN1P58418 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
CLRN1P58418 AC083849.1-201ENST00000615227 514 ntBASIC15.92■□□□□ 0.14
CLRN1P58418 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.92■□□□□ 0.14
CLRN1P58418 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CLRN1P58418 FZD10-202ENST00000539839 3282 ntBASIC15.92■□□□□ 0.14
CLRN1P58418 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC15.92■□□□□ 0.14
CLRN1P58418 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
CLRN1P58418 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CLRN1P58418 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.92■□□□□ 0.14
CLRN1P58418 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CLRN1P58418 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CLRN1P58418 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN1P58418 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CLRN1P58418 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.91■□□□□ 0.14
CLRN1P58418 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.91■□□□□ 0.14
CLRN1P58418 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CLRN1P58418 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CLRN1P58418 SAPCD2P2-201ENST00000431719 1174 ntBASIC15.91■□□□□ 0.14
CLRN1P58418 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.91■□□□□ 0.14
CLRN1P58418 AL049597.2-201ENST00000565575 961 ntBASIC15.91■□□□□ 0.14
CLRN1P58418 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.91■□□□□ 0.14
CLRN1P58418 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.91■□□□□ 0.14
CLRN1P58418 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
CLRN1P58418 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.91■□□□□ 0.14
CLRN1P58418 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CLRN1P58418 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC15.91■□□□□ 0.14
CLRN1P58418 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN1P58418 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CLRN1P58418 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.9■□□□□ 0.14
CLRN1P58418 Z83836.1-201ENST00000624605 1642 ntBASIC15.9■□□□□ 0.14
CLRN1P58418 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CLRN1P58418 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms