Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.49■□□□□ 0.39
PKNOX1P55347 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.49■□□□□ 0.39
PKNOX1P55347 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.49■□□□□ 0.39
PKNOX1P55347 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 LINC00167-201ENST00000530583 1419 ntBASIC17.48■□□□□ 0.39
PKNOX1P55347 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PKNOX1P55347 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 AL023806.1-201ENST00000603994 1649 ntBASIC17.48■□□□□ 0.39
PKNOX1P55347 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
PKNOX1P55347 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.48■□□□□ 0.39
PKNOX1P55347 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.48■□□□□ 0.39
PKNOX1P55347 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.48■□□□□ 0.39
PKNOX1P55347 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.48■□□□□ 0.39
PKNOX1P55347 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.48■□□□□ 0.39
PKNOX1P55347 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.48■□□□□ 0.39
PKNOX1P55347 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
PKNOX1P55347 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PKNOX1P55347 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
PKNOX1P55347 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.48■□□□□ 0.39
PKNOX1P55347 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
PKNOX1P55347 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.48■□□□□ 0.39
PKNOX1P55347 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PKNOX1P55347 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.47■□□□□ 0.39
PKNOX1P55347 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.47■□□□□ 0.39
PKNOX1P55347 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.47■□□□□ 0.39
PKNOX1P55347 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PKNOX1P55347 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.47■□□□□ 0.39
PKNOX1P55347 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PKNOX1P55347 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 ECEL1P3-201ENST00000427961 737 ntBASIC17.47■□□□□ 0.39
PKNOX1P55347 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.47■□□□□ 0.39
PKNOX1P55347 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
PKNOX1P55347 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.47■□□□□ 0.39
PKNOX1P55347 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.47■□□□□ 0.39
PKNOX1P55347 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.47■□□□□ 0.39
PKNOX1P55347 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PKNOX1P55347 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.47■□□□□ 0.39
PKNOX1P55347 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PKNOX1P55347 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PKNOX1P55347 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PKNOX1P55347 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.46■□□□□ 0.39
PKNOX1P55347 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PKNOX1P55347 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PKNOX1P55347 AC113404.2-201ENST00000507884 177 ntBASIC17.46■□□□□ 0.39
PKNOX1P55347 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.46■□□□□ 0.39
PKNOX1P55347 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms