Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMK1P53667 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMK1P53667 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIMK1P53667 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMK1P53667 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMK1P53667 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMK1P53667 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.54■□□□□ 0.4
LIMK1P53667 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMK1P53667 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMK1P53667 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMK1P53667 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMK1P53667 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.54■□□□□ 0.4
LIMK1P53667 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.54■□□□□ 0.4
LIMK1P53667 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
LIMK1P53667 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.54■□□□□ 0.4
LIMK1P53667 AC136632.2-201ENST00000512891 861 ntBASIC17.54■□□□□ 0.4
LIMK1P53667 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
LIMK1P53667 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMK1P53667 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.54■□□□□ 0.4
LIMK1P53667 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.54■□□□□ 0.4
LIMK1P53667 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.54■□□□□ 0.4
LIMK1P53667 AL513190.1-201ENST00000621254 727 ntBASIC17.54■□□□□ 0.4
LIMK1P53667 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
LIMK1P53667 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMK1P53667 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMK1P53667 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
LIMK1P53667 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMK1P53667 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
LIMK1P53667 AL161938.1-201ENST00000569833 2180 ntBASIC17.53■□□□□ 0.4
LIMK1P53667 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMK1P53667 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
LIMK1P53667 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LIMK1P53667 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LIMK1P53667 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMK1P53667 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LIMK1P53667 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMK1P53667 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMK1P53667 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.53■□□□□ 0.4
LIMK1P53667 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
LIMK1P53667 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMK1P53667 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMK1P53667 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMK1P53667 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LIMK1P53667 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.53■□□□□ 0.4
LIMK1P53667 AC090164.3-201ENST00000610780 2143 ntBASIC17.53■□□□□ 0.4
LIMK1P53667 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMK1P53667 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMK1P53667 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMK1P53667 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMK1P53667 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
LIMK1P53667 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMK1P53667 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
LIMK1P53667 AC079776.2-201ENST00000641154 1609 ntBASIC17.52■□□□□ 0.4
LIMK1P53667 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
LIMK1P53667 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.52■□□□□ 0.4
LIMK1P53667 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.52■□□□□ 0.4
LIMK1P53667 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
LIMK1P53667 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.52■□□□□ 0.4
LIMK1P53667 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
LIMK1P53667 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.52■□□□□ 0.4
LIMK1P53667 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMK1P53667 AL031598.1-201ENST00000561511 1773 ntBASIC17.52■□□□□ 0.4
LIMK1P53667 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMK1P53667 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMK1P53667 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMK1P53667 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.52■□□□□ 0.39
LIMK1P53667 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.52■□□□□ 0.39
LIMK1P53667 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.51■□□□□ 0.39
LIMK1P53667 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 LTB4R2-202ENST00000528054 3092 ntBASIC17.51■□□□□ 0.39
LIMK1P53667 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
LIMK1P53667 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMK1P53667 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMK1P53667 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMK1P53667 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LIMK1P53667 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMK1P53667 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMK1P53667 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMK1P53667 AC092474.2-201ENST00000424288 719 ntBASIC17.51■□□□□ 0.39
LIMK1P53667 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms