Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.75■□□□□ 0.27
CLK1P49759 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CLK1P49759 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CLK1P49759 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.75■□□□□ 0.27
CLK1P49759 SLC25A3P1-201ENST00000443844 931 ntBASIC16.75■□□□□ 0.27
CLK1P49759 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.75■□□□□ 0.27
CLK1P49759 MIR3180-4-201ENST00000582223 153 ntBASIC16.75■□□□□ 0.27
CLK1P49759 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 AC005363.2-201ENST00000618631 242 ntBASIC16.75■□□□□ 0.27
CLK1P49759 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CLK1P49759 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.75■□□□□ 0.27
CLK1P49759 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.75■□□□□ 0.27
CLK1P49759 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.75■□□□□ 0.27
CLK1P49759 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
CLK1P49759 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.75■□□□□ 0.27
CLK1P49759 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLK1P49759 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.74■□□□□ 0.27
CLK1P49759 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.74■□□□□ 0.27
CLK1P49759 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 AL139384.1-201ENST00000612143 3047 ntBASIC16.74■□□□□ 0.27
CLK1P49759 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
CLK1P49759 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.74■□□□□ 0.27
CLK1P49759 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 LIN28AP1-201ENST00000429574 405 ntBASIC16.74■□□□□ 0.27
CLK1P49759 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 AC009065.1-201ENST00000564055 1225 ntBASIC16.74■□□□□ 0.27
CLK1P49759 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.74■□□□□ 0.27
CLK1P49759 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CLK1P49759 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
CLK1P49759 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.74■□□□□ 0.27
CLK1P49759 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CLK1P49759 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLK1P49759 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.73■□□□□ 0.27
CLK1P49759 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.73■□□□□ 0.27
CLK1P49759 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.73■□□□□ 0.27
CLK1P49759 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.73■□□□□ 0.27
CLK1P49759 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 AC211429.1-201ENST00000415277 523 ntBASIC16.73■□□□□ 0.27
CLK1P49759 ECEL1P3-201ENST00000427961 737 ntBASIC16.73■□□□□ 0.27
CLK1P49759 KRT18P23-201ENST00000435622 1283 ntBASIC16.73■□□□□ 0.27
CLK1P49759 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.73■□□□□ 0.27
CLK1P49759 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.73■□□□□ 0.27
CLK1P49759 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.73■□□□□ 0.27
CLK1P49759 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CLK1P49759 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 AC112497.1-201ENST00000624824 639 ntBASIC16.73■□□□□ 0.27
CLK1P49759 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.73■□□□□ 0.27
CLK1P49759 AL031432.5-201ENST00000641059 760 ntBASIC16.73■□□□□ 0.27
CLK1P49759 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.73■□□□□ 0.27
CLK1P49759 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLK1P49759 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms