Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.29■□□□□ 0.36
HNF4AP41235 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.29■□□□□ 0.36
HNF4AP41235 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HNF4AP41235 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.29■□□□□ 0.36
HNF4AP41235 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.29■□□□□ 0.36
HNF4AP41235 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.29■□□□□ 0.36
HNF4AP41235 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.29■□□□□ 0.36
HNF4AP41235 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HNF4AP41235 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HNF4AP41235 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.28■□□□□ 0.36
HNF4AP41235 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.28■□□□□ 0.36
HNF4AP41235 TSPY12P-201ENST00000421279 868 ntBASIC17.28■□□□□ 0.36
HNF4AP41235 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.28■□□□□ 0.36
HNF4AP41235 RNF126P1-202ENST00000569893 925 ntBASIC17.28■□□□□ 0.36
HNF4AP41235 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.28■□□□□ 0.36
HNF4AP41235 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.28■□□□□ 0.36
HNF4AP41235 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
HNF4AP41235 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HNF4AP41235 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HNF4AP41235 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HNF4AP41235 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.27■□□□□ 0.36
HNF4AP41235 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.27■□□□□ 0.36
HNF4AP41235 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.27■□□□□ 0.36
HNF4AP41235 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
HNF4AP41235 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.27■□□□□ 0.36
HNF4AP41235 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HNF4AP41235 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.27■□□□□ 0.36
HNF4AP41235 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.27■□□□□ 0.36
HNF4AP41235 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
HNF4AP41235 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HNF4AP41235 AC005332.3-201ENST00000589904 676 ntBASIC17.27■□□□□ 0.36
HNF4AP41235 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.27■□□□□ 0.36
HNF4AP41235 Z83836.1-201ENST00000624605 1642 ntBASIC17.27■□□□□ 0.36
HNF4AP41235 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.27■□□□□ 0.36
HNF4AP41235 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HNF4AP41235 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HNF4AP41235 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HNF4AP41235 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.27■□□□□ 0.35
HNF4AP41235 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.27■□□□□ 0.35
HNF4AP41235 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HNF4AP41235 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
HNF4AP41235 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.27■□□□□ 0.35
HNF4AP41235 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HNF4AP41235 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
HNF4AP41235 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.26■□□□□ 0.35
HNF4AP41235 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.26■□□□□ 0.35
HNF4AP41235 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.26■□□□□ 0.35
HNF4AP41235 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.26■□□□□ 0.35
HNF4AP41235 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.26■□□□□ 0.35
HNF4AP41235 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.26■□□□□ 0.35
HNF4AP41235 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HNF4AP41235 GPR32P1-201ENST00000601788 811 ntBASIC17.26■□□□□ 0.35
HNF4AP41235 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms