Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SOX3P41225 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SOX3P41225 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SOX3P41225 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.75■□□□□ 0.27
SOX3P41225 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SOX3P41225 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.75■□□□□ 0.27
SOX3P41225 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.75■□□□□ 0.27
SOX3P41225 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.75■□□□□ 0.27
SOX3P41225 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.75■□□□□ 0.27
SOX3P41225 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.75■□□□□ 0.27
SOX3P41225 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
SOX3P41225 AC090616.6-201ENST00000582640 721 ntBASIC16.75■□□□□ 0.27
SOX3P41225 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SOX3P41225 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
SOX3P41225 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SOX3P41225 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
SOX3P41225 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
SOX3P41225 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SOX3P41225 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 AC113404.2-201ENST00000507884 177 ntBASIC16.74■□□□□ 0.27
SOX3P41225 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.74■□□□□ 0.27
SOX3P41225 IGHV3-41-201ENST00000613121 348 ntBASIC16.74■□□□□ 0.27
SOX3P41225 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SOX3P41225 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX3P41225 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
SOX3P41225 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SOX3P41225 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX3P41225 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 GMCL1P1-201ENST00000463439 1581 ntBASIC16.73■□□□□ 0.27
SOX3P41225 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SOX3P41225 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX3P41225 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SOX3P41225 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX3P41225 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SOX3P41225 AC080080.1-201ENST00000625121 2420 ntBASIC16.73■□□□□ 0.27
SOX3P41225 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
SOX3P41225 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms