Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
RFC4P35249 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
RFC4P35249 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
RFC4P35249 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC22.23■■□□□ 1.15
RFC4P35249 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RFC4P35249 AC126763.1-201ENST00000552015 2118 ntBASIC22.22■■□□□ 1.15
RFC4P35249 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
RFC4P35249 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC22.22■■□□□ 1.15
RFC4P35249 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RFC4P35249 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
RFC4P35249 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RFC4P35249 CD99-202ENST00000381180 530 ntTSL 2 BASIC22.22■■□□□ 1.15
RFC4P35249 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC22.22■■□□□ 1.15
RFC4P35249 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RFC4P35249 STK19B-204ENST00000512515 211 ntBASIC22.22■■□□□ 1.15
RFC4P35249 AL513210.1-201ENST00000629608 234 ntBASIC22.22■■□□□ 1.15
RFC4P35249 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC22.22■■□□□ 1.15
RFC4P35249 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
RFC4P35249 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC22.22■■□□□ 1.15
RFC4P35249 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
RFC4P35249 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC22.22■■□□□ 1.15
RFC4P35249 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC22.22■■□□□ 1.15
RFC4P35249 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC22.21■■□□□ 1.15
RFC4P35249 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
RFC4P35249 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC22.21■■□□□ 1.15
RFC4P35249 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
RFC4P35249 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC22.21■■□□□ 1.15
RFC4P35249 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC22.21■■□□□ 1.15
RFC4P35249 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 LSM12-202ENST00000585388 942 ntTSL 3 BASIC22.21■■□□□ 1.15
RFC4P35249 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC22.21■■□□□ 1.15
RFC4P35249 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC22.21■■□□□ 1.15
RFC4P35249 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 REM2-202ENST00000536884 1331 ntTSL 2 BASIC22.21■■□□□ 1.15
RFC4P35249 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 SP100-208ENST00000427101 1922 ntTSL 2 BASIC22.21■■□□□ 1.15
RFC4P35249 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC22.21■■□□□ 1.15
RFC4P35249 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
RFC4P35249 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.21■■□□□ 1.15
RFC4P35249 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
RFC4P35249 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
RFC4P35249 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.2■■□□□ 1.14
RFC4P35249 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC22.2■■□□□ 1.14
RFC4P35249 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC22.2■■□□□ 1.14
RFC4P35249 AC004461.1-201ENST00000412461 403 ntBASIC22.2■■□□□ 1.14
RFC4P35249 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC22.2■■□□□ 1.14
RFC4P35249 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC22.2■■□□□ 1.14
RFC4P35249 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC22.2■■□□□ 1.14
RFC4P35249 AC092902.6-201ENST00000641783 218 ntBASIC22.2■■□□□ 1.14
RFC4P35249 AC116562.4-201ENST00000641316 2276 ntBASIC22.2■■□□□ 1.14
RFC4P35249 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC22.2■■□□□ 1.14
RFC4P35249 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
RFC4P35249 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
RFC4P35249 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
RFC4P35249 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC22.19■■□□□ 1.14
RFC4P35249 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
RFC4P35249 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
RFC4P35249 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC22.19■■□□□ 1.14
RFC4P35249 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC22.19■■□□□ 1.14
RFC4P35249 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC22.19■■□□□ 1.14
RFC4P35249 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC22.19■■□□□ 1.14
RFC4P35249 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC22.19■■□□□ 1.14
RFC4P35249 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC22.19■■□□□ 1.14
RFC4P35249 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC22.19■■□□□ 1.14
RFC4P35249 STK25P1-201ENST00000585406 838 ntBASIC22.19■■□□□ 1.14
RFC4P35249 AC105339.1-204ENST00000636249 355 ntBASIC22.19■■□□□ 1.14
RFC4P35249 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC22.19■■□□□ 1.14
RFC4P35249 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC22.19■■□□□ 1.14
RFC4P35249 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
RFC4P35249 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RFC4P35249 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms