Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.37■□□□□ 0.85
SMARCA1P28370 FGFR3P6-201ENST00000457012 610 ntBASIC20.37■□□□□ 0.85
SMARCA1P28370 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.37■□□□□ 0.85
SMARCA1P28370 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.37■□□□□ 0.85
SMARCA1P28370 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 STK25P1-201ENST00000585406 838 ntBASIC20.37■□□□□ 0.85
SMARCA1P28370 AL121912.1-201ENST00000603683 238 ntBASIC20.37■□□□□ 0.85
SMARCA1P28370 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.37■□□□□ 0.85
SMARCA1P28370 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.37■□□□□ 0.85
SMARCA1P28370 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.37■□□□□ 0.85
SMARCA1P28370 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCA1P28370 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SMARCA1P28370 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCA1P28370 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SMARCA1P28370 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCA1P28370 HLA-J-201ENST00000462773 1622 ntBASIC20.36■□□□□ 0.85
SMARCA1P28370 AC079776.2-201ENST00000641154 1609 ntBASIC20.36■□□□□ 0.85
SMARCA1P28370 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SMARCA1P28370 PRYP5-201ENST00000451909 266 ntBASIC20.36■□□□□ 0.85
SMARCA1P28370 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 MTDHP3-201ENST00000594186 672 ntBASIC20.36■□□□□ 0.85
SMARCA1P28370 AC104692.2-201ENST00000603054 253 ntBASIC20.36■□□□□ 0.85
SMARCA1P28370 AC008608.2-201ENST00000606089 416 ntBASIC20.36■□□□□ 0.85
SMARCA1P28370 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.36■□□□□ 0.85
SMARCA1P28370 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.36■□□□□ 0.85
SMARCA1P28370 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 AC132938.5-201ENST00000624980 1813 ntBASIC20.36■□□□□ 0.85
SMARCA1P28370 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCA1P28370 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.36■□□□□ 0.85
SMARCA1P28370 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMARCA1P28370 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.36■□□□□ 0.85
SMARCA1P28370 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.35■□□□□ 0.85
SMARCA1P28370 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SMARCA1P28370 AC133963.1-201ENST00000504166 1679 ntBASIC20.35■□□□□ 0.85
SMARCA1P28370 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SMARCA1P28370 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SMARCA1P28370 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SMARCA1P28370 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.35■□□□□ 0.85
SMARCA1P28370 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 AC003669.1-201ENST00000334569 611 ntBASIC20.35■□□□□ 0.85
SMARCA1P28370 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
SMARCA1P28370 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.35■□□□□ 0.85
SMARCA1P28370 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.35■□□□□ 0.85
SMARCA1P28370 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 AC073592.5-201ENST00000624854 528 ntBASIC20.35■□□□□ 0.85
SMARCA1P28370 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.35■□□□□ 0.85
SMARCA1P28370 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.35■□□□□ 0.85
SMARCA1P28370 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SMARCA1P28370 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SMARCA1P28370 AC012317.2-201ENST00000623305 2251 ntBASIC20.35■□□□□ 0.85
SMARCA1P28370 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.35■□□□□ 0.85
SMARCA1P28370 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SMARCA1P28370 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.35■□□□□ 0.85
SMARCA1P28370 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMARCA1P28370 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.35■□□□□ 0.85
SMARCA1P28370 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCA1P28370 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCA1P28370 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
SMARCA1P28370 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SMARCA1P28370 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCA1P28370 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCA1P28370 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCA1P28370 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCA1P28370 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SMARCA1P28370 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.34■□□□□ 0.85
SMARCA1P28370 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.34■□□□□ 0.85
SMARCA1P28370 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.34■□□□□ 0.85
SMARCA1P28370 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SMARCA1P28370 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.34■□□□□ 0.85
SMARCA1P28370 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SMARCA1P28370 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.34■□□□□ 0.85
SMARCA1P28370 AL139288.1-201ENST00000623748 933 ntBASIC20.34■□□□□ 0.85
SMARCA1P28370 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCA1P28370 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMARCA1P28370 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SMARCA1P28370 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms