Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
COL6A3P12111 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL6A3P12111 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL6A3P12111 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL6A3P12111 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.36■□□□□ 0.53
COL6A3P12111 BNIP3P42-201ENST00000454982 569 ntBASIC18.36■□□□□ 0.53
COL6A3P12111 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.36■□□□□ 0.53
COL6A3P12111 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A3P12111 BNIP3P29-201ENST00000598302 571 ntBASIC18.36■□□□□ 0.53
COL6A3P12111 AC011447.5-201ENST00000616168 564 ntBASIC18.36■□□□□ 0.53
COL6A3P12111 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL6A3P12111 AC007541.1-201ENST00000570282 1469 ntBASIC18.36■□□□□ 0.53
COL6A3P12111 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.36■□□□□ 0.53
COL6A3P12111 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A3P12111 AC020907.5-201ENST00000624372 1936 ntBASIC18.36■□□□□ 0.53
COL6A3P12111 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 AL353779.1-201ENST00000434793 351 ntBASIC18.36■□□□□ 0.53
COL6A3P12111 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.36■□□□□ 0.53
COL6A3P12111 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.36■□□□□ 0.53
COL6A3P12111 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A3P12111 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A3P12111 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A3P12111 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A3P12111 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.35■□□□□ 0.53
COL6A3P12111 AC140658.5-201ENST00000438532 169 ntBASIC18.35■□□□□ 0.53
COL6A3P12111 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A3P12111 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A3P12111 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A3P12111 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.35■□□□□ 0.53
COL6A3P12111 AC009407.1-201ENST00000568958 598 ntBASIC18.35■□□□□ 0.53
COL6A3P12111 AC026740.1-201ENST00000607068 791 ntBASIC18.35■□□□□ 0.53
COL6A3P12111 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL6A3P12111 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL6A3P12111 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A3P12111 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A3P12111 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A3P12111 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A3P12111 AL353593.2-201ENST00000602529 1483 ntBASIC18.35■□□□□ 0.53
COL6A3P12111 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A3P12111 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A3P12111 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.35■□□□□ 0.53
COL6A3P12111 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.35■□□□□ 0.53
COL6A3P12111 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 FXNP2-201ENST00000411625 547 ntBASIC18.34■□□□□ 0.53
COL6A3P12111 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.34■□□□□ 0.53
COL6A3P12111 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
COL6A3P12111 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.34■□□□□ 0.53
COL6A3P12111 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A3P12111 AL158211.5-201ENST00000623583 2518 ntBASIC18.34■□□□□ 0.53
COL6A3P12111 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.34■□□□□ 0.53
COL6A3P12111 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A3P12111 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A3P12111 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 ANKRD19P-201ENST00000338192 862 ntBASIC18.34■□□□□ 0.53
COL6A3P12111 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 AC096633.1-201ENST00000422446 749 ntBASIC18.34■□□□□ 0.53
COL6A3P12111 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 AL138828.2-201ENST00000615812 383 ntBASIC18.34■□□□□ 0.53
COL6A3P12111 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
COL6A3P12111 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL6A3P12111 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A3P12111 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL6A3P12111 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.34■□□□□ 0.53
COL6A3P12111 AC009477.1-201ENST00000452936 217 ntBASIC18.34■□□□□ 0.53
COL6A3P12111 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A3P12111 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.34■□□□□ 0.53
COL6A3P12111 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A3P12111 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
COL6A3P12111 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.33■□□□□ 0.53
COL6A3P12111 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.33■□□□□ 0.53
COL6A3P12111 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.33■□□□□ 0.53
COL6A3P12111 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.33■□□□□ 0.53
COL6A3P12111 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A3P12111 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
COL6A3P12111 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A3P12111 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.33■□□□□ 0.53
COL6A3P12111 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
COL6A3P12111 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
COL6A3P12111 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A3P12111 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL6A3P12111 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.53
COL6A3P12111 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
COL6A3P12111 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms