Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HLA-DOAP06340 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HLA-DOAP06340 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.91■□□□□ 0.94
HLA-DOAP06340 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.91■□□□□ 0.94
HLA-DOAP06340 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.91■□□□□ 0.94
HLA-DOAP06340 AC006557.2-201ENST00000592985 1240 ntBASIC20.91■□□□□ 0.94
HLA-DOAP06340 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.91■□□□□ 0.94
HLA-DOAP06340 AC004817.3-201ENST00000602957 2129 ntBASIC20.91■□□□□ 0.94
HLA-DOAP06340 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HLA-DOAP06340 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.91■□□□□ 0.94
HLA-DOAP06340 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HLA-DOAP06340 AC090164.3-201ENST00000610780 2143 ntBASIC20.91■□□□□ 0.94
HLA-DOAP06340 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.91■□□□□ 0.94
HLA-DOAP06340 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HLA-DOAP06340 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HLA-DOAP06340 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
HLA-DOAP06340 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DOAP06340 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
HLA-DOAP06340 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DOAP06340 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DOAP06340 AP002414.3-201ENST00000589352 1468 ntBASIC20.9■□□□□ 0.94
HLA-DOAP06340 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DOAP06340 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.9■□□□□ 0.94
HLA-DOAP06340 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.9■□□□□ 0.94
HLA-DOAP06340 RNA5SP415-201ENST00000517246 115 ntBASIC20.9■□□□□ 0.94
HLA-DOAP06340 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HLA-DOAP06340 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.9■□□□□ 0.94
HLA-DOAP06340 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DOAP06340 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HLA-DOAP06340 GPALPP1-207ENST00000611650 899 ntBASIC20.9■□□□□ 0.94
HLA-DOAP06340 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DOAP06340 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HLA-DOAP06340 AC009949.1-201ENST00000623048 1830 ntBASIC20.9■□□□□ 0.94
HLA-DOAP06340 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DOAP06340 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.9■□□□□ 0.94
HLA-DOAP06340 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.89■□□□□ 0.94
HLA-DOAP06340 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HLA-DOAP06340 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.94
HLA-DOAP06340 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.89■□□□□ 0.94
HLA-DOAP06340 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HLA-DOAP06340 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HLA-DOAP06340 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HLA-DOAP06340 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 PMS2P7-201ENST00000506558 1336 ntBASIC20.89■□□□□ 0.93
HLA-DOAP06340 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 KLF4P1-201ENST00000412782 1185 ntBASIC20.89■□□□□ 0.93
HLA-DOAP06340 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 Z83851.2-201ENST00000609564 659 ntBASIC20.89■□□□□ 0.93
HLA-DOAP06340 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 MIR1199-201ENST00000621445 119 ntBASIC20.89■□□□□ 0.93
HLA-DOAP06340 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
HLA-DOAP06340 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DOAP06340 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 AC087289.5-201ENST00000586076 3175 ntBASIC20.88■□□□□ 0.93
HLA-DOAP06340 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 AC003669.1-201ENST00000334569 611 ntBASIC20.88■□□□□ 0.93
HLA-DOAP06340 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 AC027601.4-201ENST00000611259 610 ntBASIC20.88■□□□□ 0.93
HLA-DOAP06340 AC006538.3-201ENST00000612495 578 ntBASIC20.88■□□□□ 0.93
HLA-DOAP06340 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.88■□□□□ 0.93
HLA-DOAP06340 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.88■□□□□ 0.93
HLA-DOAP06340 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DOAP06340 AC132938.5-201ENST00000624980 1813 ntBASIC20.88■□□□□ 0.93
HLA-DOAP06340 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms