Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
SDC3O75056 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.36■□□□□ 0.37
SDC3O75056 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
SDC3O75056 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 AC093010.1-201ENST00000473625 1624 ntBASIC17.36■□□□□ 0.37
SDC3O75056 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 AC096633.1-201ENST00000422446 749 ntBASIC17.35■□□□□ 0.37
SDC3O75056 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.35■□□□□ 0.37
SDC3O75056 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
SDC3O75056 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
SDC3O75056 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDC3O75056 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
SDC3O75056 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SDC3O75056 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SDC3O75056 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SDC3O75056 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SDC3O75056 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.34■□□□□ 0.37
SDC3O75056 CROCCP3-202ENST00000420820 1947 ntBASIC17.34■□□□□ 0.37
SDC3O75056 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
SDC3O75056 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.34■□□□□ 0.37
SDC3O75056 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SDC3O75056 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.34■□□□□ 0.37
SDC3O75056 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
SDC3O75056 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SDC3O75056 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.34■□□□□ 0.37
SDC3O75056 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
SDC3O75056 MIR1199-201ENST00000621445 119 ntBASIC17.34■□□□□ 0.37
SDC3O75056 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SDC3O75056 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.34■□□□□ 0.37
SDC3O75056 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SDC3O75056 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SDC3O75056 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SDC3O75056 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SDC3O75056 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SDC3O75056 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
SDC3O75056 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SDC3O75056 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SDC3O75056 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SDC3O75056 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.33■□□□□ 0.37
SDC3O75056 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
SDC3O75056 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.33■□□□□ 0.36
SDC3O75056 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
SDC3O75056 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SDC3O75056 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms