Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
GFRA3O60609 AC112492.5-201ENST00000421897 457 ntBASIC17.14■□□□□ 0.33
GFRA3O60609 FAM185BP-201ENST00000443595 716 ntBASIC17.14■□□□□ 0.33
GFRA3O60609 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
GFRA3O60609 INE1-201ENST00000456273 945 ntBASIC17.14■□□□□ 0.33
GFRA3O60609 IGHV3-62-201ENST00000520057 340 ntBASIC17.14■□□□□ 0.33
GFRA3O60609 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.14■□□□□ 0.33
GFRA3O60609 KRT17P8-201ENST00000540749 863 ntBASIC17.14■□□□□ 0.33
GFRA3O60609 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
GFRA3O60609 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.14■□□□□ 0.33
GFRA3O60609 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
GFRA3O60609 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
GFRA3O60609 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
GFRA3O60609 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
GFRA3O60609 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.14■□□□□ 0.33
GFRA3O60609 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
GFRA3O60609 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
GFRA3O60609 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.14■□□□□ 0.33
GFRA3O60609 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
GFRA3O60609 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
GFRA3O60609 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
GFRA3O60609 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.13■□□□□ 0.33
GFRA3O60609 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.13■□□□□ 0.33
GFRA3O60609 PI4KAP1-204ENST00000612579 1703 ntBASIC17.13■□□□□ 0.33
GFRA3O60609 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
GFRA3O60609 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 AC132938.5-201ENST00000624980 1813 ntBASIC17.13■□□□□ 0.33
GFRA3O60609 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.13■□□□□ 0.33
GFRA3O60609 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
GFRA3O60609 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.13■□□□□ 0.33
GFRA3O60609 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.13■□□□□ 0.33
GFRA3O60609 AL135744.1-201ENST00000565098 629 ntBASIC17.13■□□□□ 0.33
GFRA3O60609 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
GFRA3O60609 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
GFRA3O60609 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.13■□□□□ 0.33
GFRA3O60609 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.13■□□□□ 0.33
GFRA3O60609 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
GFRA3O60609 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.13■□□□□ 0.33
GFRA3O60609 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.13■□□□□ 0.33
GFRA3O60609 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.13■□□□□ 0.33
GFRA3O60609 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
GFRA3O60609 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
GFRA3O60609 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
GFRA3O60609 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
GFRA3O60609 UXT-AS1-201ENST00000590504 1525 ntBASIC17.12■□□□□ 0.33
GFRA3O60609 REXO1L6P-201ENST00000603433 1515 ntBASIC17.12■□□□□ 0.33
GFRA3O60609 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
GFRA3O60609 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
GFRA3O60609 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.12■□□□□ 0.33
GFRA3O60609 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.12■□□□□ 0.33
GFRA3O60609 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
GFRA3O60609 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.12■□□□□ 0.33
GFRA3O60609 AC022210.1-201ENST00000449856 793 ntBASIC17.12■□□□□ 0.33
GFRA3O60609 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.12■□□□□ 0.33
GFRA3O60609 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.12■□□□□ 0.33
GFRA3O60609 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.12■□□□□ 0.33
GFRA3O60609 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
GFRA3O60609 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
GFRA3O60609 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 MTMR9LP-203ENST00000426597 1545 ntBASIC17.11■□□□□ 0.33
GFRA3O60609 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.11■□□□□ 0.33
GFRA3O60609 AC022144.1-201ENST00000602255 1580 ntBASIC17.11■□□□□ 0.33
GFRA3O60609 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.11■□□□□ 0.33
GFRA3O60609 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.11■□□□□ 0.33
GFRA3O60609 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
GFRA3O60609 AL512384.1-201ENST00000406683 331 ntBASIC17.11■□□□□ 0.33
GFRA3O60609 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.11■□□□□ 0.33
GFRA3O60609 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.11■□□□□ 0.33
GFRA3O60609 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.11■□□□□ 0.33
GFRA3O60609 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.11■□□□□ 0.33
GFRA3O60609 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.11■□□□□ 0.33
GFRA3O60609 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
GFRA3O60609 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.11■□□□□ 0.33
GFRA3O60609 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
GFRA3O60609 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms