Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA4Q9Y5G9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.97■■□□□ 1.43
PCDHGA4Q9Y5G9 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA4Q9Y5G9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.97■■□□□ 1.43
PCDHGA4Q9Y5G9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.97■■□□□ 1.43
PCDHGA4Q9Y5G9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA4Q9Y5G9 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
PCDHGA4Q9Y5G9 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHGA4Q9Y5G9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
PCDHGA4Q9Y5G9 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA4Q9Y5G9 KRT18P60-201ENST00000312876 1297 ntBASIC23.95■■□□□ 1.42
PCDHGA4Q9Y5G9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA4Q9Y5G9 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA4Q9Y5G9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA4Q9Y5G9 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.94■■□□□ 1.42
PCDHGA4Q9Y5G9 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.94■■□□□ 1.42
PCDHGA4Q9Y5G9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA4Q9Y5G9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.94■■□□□ 1.42
PCDHGA4Q9Y5G9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
PCDHGA4Q9Y5G9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA4Q9Y5G9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA4Q9Y5G9 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 AC004987.1-201ENST00000428627 508 ntBASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 ATP5G2P3-201ENST00000429083 425 ntBASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 AC092296.2-201ENST00000589470 999 ntBASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA4Q9Y5G9 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
PCDHGA4Q9Y5G9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHGA4Q9Y5G9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.92■■□□□ 1.42
PCDHGA4Q9Y5G9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.92■■□□□ 1.42
PCDHGA4Q9Y5G9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
PCDHGA4Q9Y5G9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA4Q9Y5G9 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA4Q9Y5G9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA4Q9Y5G9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA4Q9Y5G9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA4Q9Y5G9 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCDHGA4Q9Y5G9 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.9■■□□□ 1.42
PCDHGA4Q9Y5G9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA4Q9Y5G9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA4Q9Y5G9 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA4Q9Y5G9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
PCDHGA4Q9Y5G9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA4Q9Y5G9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA4Q9Y5G9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
PCDHGA4Q9Y5G9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PCDHGA4Q9Y5G9 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.89■■□□□ 1.41
PCDHGA4Q9Y5G9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCDHGA4Q9Y5G9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.89■■□□□ 1.41
PCDHGA4Q9Y5G9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.88■■□□□ 1.41
PCDHGA4Q9Y5G9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
PCDHGA4Q9Y5G9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.88■■□□□ 1.41
PCDHGA4Q9Y5G9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.88■■□□□ 1.41
PCDHGA4Q9Y5G9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.88■■□□□ 1.41
PCDHGA4Q9Y5G9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.88■■□□□ 1.41
PCDHGA4Q9Y5G9 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHGA4Q9Y5G9 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PCDHGA4Q9Y5G9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA4Q9Y5G9 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA4Q9Y5G9 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA4Q9Y5G9 RARRES2P1-201ENST00000474487 481 ntBASIC23.87■■□□□ 1.41
PCDHGA4Q9Y5G9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.87■■□□□ 1.41
PCDHGA4Q9Y5G9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCDHGA4Q9Y5G9 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.87■■□□□ 1.41
PCDHGA4Q9Y5G9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA4Q9Y5G9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA4Q9Y5G9 ECEL1P2-201ENST00000461596 1295 ntBASIC23.86■■□□□ 1.41
PCDHGA4Q9Y5G9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.86■■□□□ 1.41
PCDHGA4Q9Y5G9 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
PCDHGA4Q9Y5G9 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
PCDHGA4Q9Y5G9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDHGA4Q9Y5G9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.86■■□□□ 1.41
PCDHGA4Q9Y5G9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.85■■□□□ 1.41
PCDHGA4Q9Y5G9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.85■■□□□ 1.41
PCDHGA4Q9Y5G9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PCDHGA4Q9Y5G9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.85■■□□□ 1.41
PCDHGA4Q9Y5G9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA4Q9Y5G9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA4Q9Y5G9 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
PCDHGA4Q9Y5G9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
PCDHGA4Q9Y5G9 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCDHGA4Q9Y5G9 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
PCDHGA4Q9Y5G9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHGA4Q9Y5G9 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.83■■□□□ 1.41
PCDHGA4Q9Y5G9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCDHGA4Q9Y5G9 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.83■■□□□ 1.4
PCDHGA4Q9Y5G9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA4Q9Y5G9 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA4Q9Y5G9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDHGA4Q9Y5G9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA4Q9Y5G9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
PCDHGA4Q9Y5G9 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA4Q9Y5G9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHGA4Q9Y5G9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
PCDHGA4Q9Y5G9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms