Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.43■■□□□ 1.34
VPS33AQ96AX1 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
VPS33AQ96AX1 AC021231.2-201ENST00000594613 730 ntBASIC23.43■■□□□ 1.34
VPS33AQ96AX1 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.43■■□□□ 1.34
VPS33AQ96AX1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.34
VPS33AQ96AX1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS33AQ96AX1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.41■■□□□ 1.34
VPS33AQ96AX1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
VPS33AQ96AX1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.41■■□□□ 1.34
VPS33AQ96AX1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
VPS33AQ96AX1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS33AQ96AX1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
VPS33AQ96AX1 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS33AQ96AX1 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS33AQ96AX1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
VPS33AQ96AX1 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
VPS33AQ96AX1 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.4■■□□□ 1.34
VPS33AQ96AX1 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
VPS33AQ96AX1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS33AQ96AX1 ERN1-208ENST00000606895 2068 ntBASIC23.39■■□□□ 1.34
VPS33AQ96AX1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
VPS33AQ96AX1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
VPS33AQ96AX1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
VPS33AQ96AX1 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
VPS33AQ96AX1 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
VPS33AQ96AX1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.38■■□□□ 1.33
VPS33AQ96AX1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
VPS33AQ96AX1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.38■■□□□ 1.33
VPS33AQ96AX1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.38■■□□□ 1.33
VPS33AQ96AX1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
VPS33AQ96AX1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
VPS33AQ96AX1 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
VPS33AQ96AX1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
VPS33AQ96AX1 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
VPS33AQ96AX1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
VPS33AQ96AX1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
VPS33AQ96AX1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.35■■□□□ 1.33
VPS33AQ96AX1 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.35■■□□□ 1.33
VPS33AQ96AX1 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
VPS33AQ96AX1 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
VPS33AQ96AX1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
VPS33AQ96AX1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
VPS33AQ96AX1 AC093323.1-202ENST00000635031 2045 ntBASIC23.34■■□□□ 1.33
VPS33AQ96AX1 DUX4L29-201ENST00000425409 679 ntBASIC23.34■■□□□ 1.33
VPS33AQ96AX1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.33■■□□□ 1.33
VPS33AQ96AX1 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
VPS33AQ96AX1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
VPS33AQ96AX1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.33■■□□□ 1.33
VPS33AQ96AX1 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
VPS33AQ96AX1 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
VPS33AQ96AX1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VPS33AQ96AX1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.32■■□□□ 1.32
VPS33AQ96AX1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
VPS33AQ96AX1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.32■■□□□ 1.32
VPS33AQ96AX1 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.32■■□□□ 1.32
VPS33AQ96AX1 AC010501.1-201ENST00000606270 1962 ntBASIC23.32■■□□□ 1.32
VPS33AQ96AX1 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
VPS33AQ96AX1 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS33AQ96AX1 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS33AQ96AX1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
VPS33AQ96AX1 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
VPS33AQ96AX1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.3■■□□□ 1.32
VPS33AQ96AX1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
VPS33AQ96AX1 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.3■■□□□ 1.32
VPS33AQ96AX1 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS33AQ96AX1 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
VPS33AQ96AX1 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
VPS33AQ96AX1 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
VPS33AQ96AX1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
VPS33AQ96AX1 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
VPS33AQ96AX1 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
VPS33AQ96AX1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
VPS33AQ96AX1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VPS33AQ96AX1 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
VPS33AQ96AX1 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.28■■□□□ 1.32
VPS33AQ96AX1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.28■■□□□ 1.32
VPS33AQ96AX1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.27■■□□□ 1.32
VPS33AQ96AX1 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
VPS33AQ96AX1 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS33AQ96AX1 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS33AQ96AX1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
VPS33AQ96AX1 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
VPS33AQ96AX1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.26■■□□□ 1.31
VPS33AQ96AX1 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS33AQ96AX1 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS33AQ96AX1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.26■■□□□ 1.31
VPS33AQ96AX1 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
VPS33AQ96AX1 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.26■■□□□ 1.31
VPS33AQ96AX1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms