Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTP4A1Q93096 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTP4A1Q93096 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTP4A1Q93096 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
PTP4A1Q93096 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTP4A1Q93096 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTP4A1Q93096 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTP4A1Q93096 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTP4A1Q93096 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PTP4A1Q93096 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
PTP4A1Q93096 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.99■■□□□ 1.11
PTP4A1Q93096 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTP4A1Q93096 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.99■■□□□ 1.11
PTP4A1Q93096 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTP4A1Q93096 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTP4A1Q93096 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PTP4A1Q93096 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTP4A1Q93096 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PTP4A1Q93096 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTP4A1Q93096 LINC01971-201ENST00000617888 1048 ntBASIC21.98■■□□□ 1.11
PTP4A1Q93096 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTP4A1Q93096 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTP4A1Q93096 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.97■■□□□ 1.11
PTP4A1Q93096 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
PTP4A1Q93096 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.97■■□□□ 1.11
PTP4A1Q93096 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
PTP4A1Q93096 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTP4A1Q93096 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.96■■□□□ 1.11
PTP4A1Q93096 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.96■■□□□ 1.11
PTP4A1Q93096 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTP4A1Q93096 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PTP4A1Q93096 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTP4A1Q93096 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTP4A1Q93096 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.95■■□□□ 1.1
PTP4A1Q93096 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PTP4A1Q93096 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.95■■□□□ 1.1
PTP4A1Q93096 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTP4A1Q93096 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTP4A1Q93096 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTP4A1Q93096 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
PTP4A1Q93096 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.94■■□□□ 1.1
PTP4A1Q93096 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTP4A1Q93096 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTP4A1Q93096 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PTP4A1Q93096 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTP4A1Q93096 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTP4A1Q93096 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.93■■□□□ 1.1
PTP4A1Q93096 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTP4A1Q93096 ERN1-208ENST00000606895 2068 ntBASIC21.92■■□□□ 1.1
PTP4A1Q93096 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.92■■□□□ 1.1
PTP4A1Q93096 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTP4A1Q93096 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
PTP4A1Q93096 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTP4A1Q93096 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTP4A1Q93096 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTP4A1Q93096 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
PTP4A1Q93096 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTP4A1Q93096 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.91■■□□□ 1.1
PTP4A1Q93096 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.91■■□□□ 1.1
PTP4A1Q93096 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.91■■□□□ 1.1
PTP4A1Q93096 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTP4A1Q93096 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTP4A1Q93096 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTP4A1Q93096 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.9■■□□□ 1.1
PTP4A1Q93096 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTP4A1Q93096 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
PTP4A1Q93096 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTP4A1Q93096 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.9■■□□□ 1.1
PTP4A1Q93096 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PTP4A1Q93096 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTP4A1Q93096 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
PTP4A1Q93096 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
PTP4A1Q93096 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.89■■□□□ 1.09
PTP4A1Q93096 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PTP4A1Q93096 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PTP4A1Q93096 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.89■■□□□ 1.09
PTP4A1Q93096 AC010501.1-201ENST00000606270 1962 ntBASIC21.88■■□□□ 1.09
PTP4A1Q93096 DUX4L11-201ENST00000611504 1267 ntBASIC21.88■■□□□ 1.09
PTP4A1Q93096 DUX4L12-201ENST00000614593 1267 ntBASIC21.88■■□□□ 1.09
PTP4A1Q93096 DUX4L14-201ENST00000621227 1267 ntBASIC21.88■■□□□ 1.09
PTP4A1Q93096 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
PTP4A1Q93096 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PTP4A1Q93096 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
PTP4A1Q93096 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
PTP4A1Q93096 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
PTP4A1Q93096 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTP4A1Q93096 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L13-201ENST00000554103 1267 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L15-201ENST00000611059 1267 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L23-201ENST00000615195 1269 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L24-201ENST00000617576 1269 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L22-201ENST00000618238 1269 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L20-201ENST00000619712 1269 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L21-201ENST00000622058 1269 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L10-201ENST00000622460 1267 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 DUX4L25-201ENST00000624915 1269 ntBASIC21.86■■□□□ 1.09
PTP4A1Q93096 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.86■■□□□ 1.09
PTP4A1Q93096 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTP4A1Q93096 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTP4A1Q93096 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms