Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
SH3RF1Q7Z6J0 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SH3RF1Q7Z6J0 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
SH3RF1Q7Z6J0 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SH3RF1Q7Z6J0 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
SH3RF1Q7Z6J0 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SH3RF1Q7Z6J0 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC28.26■■■□□ 2.11
SH3RF1Q7Z6J0 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SH3RF1Q7Z6J0 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
SH3RF1Q7Z6J0 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SH3RF1Q7Z6J0 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 DUX4L18-201ENST00000553347 1267 ntBASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 AC129492.7-201ENST00000622992 756 ntBASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC28.24■■■□□ 2.11
SH3RF1Q7Z6J0 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 AL035685.1-201ENST00000636663 812 ntBASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC28.23■■■□□ 2.11
SH3RF1Q7Z6J0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 MED25-210ENST00000612854 801 ntTSL 5 BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 MED25-214ENST00000622402 642 ntTSL 5 BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SH3RF1Q7Z6J0 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SH3RF1Q7Z6J0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
SH3RF1Q7Z6J0 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
SH3RF1Q7Z6J0 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
SH3RF1Q7Z6J0 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SH3RF1Q7Z6J0 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 AL451085.2-201ENST00000605085 799 ntBASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.19■■■□□ 2.1
SH3RF1Q7Z6J0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SH3RF1Q7Z6J0 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
SH3RF1Q7Z6J0 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
SH3RF1Q7Z6J0 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC28.17■■■□□ 2.1
SH3RF1Q7Z6J0 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SH3RF1Q7Z6J0 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.17■■■□□ 2.1
SH3RF1Q7Z6J0 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 AL157400.5-201ENST00000507624 621 ntBASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SH3RF1Q7Z6J0 PKM-203ENST00000389093 2279 ntTSL 5 BASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 AL592295.1-201ENST00000400984 884 ntBASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 AL592293.1-201ENST00000502889 1188 ntBASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
SH3RF1Q7Z6J0 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SH3RF1Q7Z6J0 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.1
SH3RF1Q7Z6J0 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SH3RF1Q7Z6J0 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SH3RF1Q7Z6J0 AC009831.1-201ENST00000580420 1582 ntBASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SH3RF1Q7Z6J0 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 AC007029.1-201ENST00000604183 313 ntBASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC28.1■■■□□ 2.09
SH3RF1Q7Z6J0 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC28.09■■■□□ 2.09
SH3RF1Q7Z6J0 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SH3RF1Q7Z6J0 TRIR-205ENST00000592273 783 ntTSL 3 BASIC28.09■■■□□ 2.09
SH3RF1Q7Z6J0 AC133552.2-201ENST00000619106 1032 ntBASIC28.09■■■□□ 2.09
SH3RF1Q7Z6J0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
SH3RF1Q7Z6J0 AC126177.7-201ENST00000547904 679 ntBASIC28.08■■■□□ 2.09
SH3RF1Q7Z6J0 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
SH3RF1Q7Z6J0 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.08■■■□□ 2.09
SH3RF1Q7Z6J0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms