Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
SOX3P41225 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX3P41225 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23■■□□□ 1.27
SOX3P41225 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23■■□□□ 1.27
SOX3P41225 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23■■□□□ 1.27
SOX3P41225 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SOX3P41225 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SOX3P41225 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23■■□□□ 1.27
SOX3P41225 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23■■□□□ 1.27
SOX3P41225 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
SOX3P41225 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.99■■□□□ 1.27
SOX3P41225 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
SOX3P41225 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
SOX3P41225 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SOX3P41225 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.98■■□□□ 1.27
SOX3P41225 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.98■■□□□ 1.27
SOX3P41225 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
SOX3P41225 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.97■■□□□ 1.27
SOX3P41225 AL359258.2-201ENST00000564063 1566 ntBASIC22.97■■□□□ 1.27
SOX3P41225 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SOX3P41225 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.97■■□□□ 1.27
SOX3P41225 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
SOX3P41225 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
SOX3P41225 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.96■■□□□ 1.27
SOX3P41225 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SOX3P41225 AL449106.1-201ENST00000608517 1980 ntBASIC22.96■■□□□ 1.27
SOX3P41225 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
SOX3P41225 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.95■■□□□ 1.26
SOX3P41225 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
SOX3P41225 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SOX3P41225 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SOX3P41225 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
SOX3P41225 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.95■■□□□ 1.26
SOX3P41225 AC092296.2-201ENST00000589470 999 ntBASIC22.95■■□□□ 1.26
SOX3P41225 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SOX3P41225 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.94■■□□□ 1.26
SOX3P41225 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
SOX3P41225 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SOX3P41225 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.93■■□□□ 1.26
SOX3P41225 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SOX3P41225 MOB2-207ENST00000614710 705 ntTSL 5 BASIC22.92■■□□□ 1.26
SOX3P41225 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SOX3P41225 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.92■■□□□ 1.26
SOX3P41225 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
SOX3P41225 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
SOX3P41225 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.91■■□□□ 1.26
SOX3P41225 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SOX3P41225 AL157400.5-201ENST00000507624 621 ntBASIC22.91■■□□□ 1.26
SOX3P41225 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
SOX3P41225 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SOX3P41225 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
SOX3P41225 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SOX3P41225 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.9■■□□□ 1.26
SOX3P41225 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SOX3P41225 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.89■■□□□ 1.26
SOX3P41225 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.26
SOX3P41225 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.89■■□□□ 1.26
SOX3P41225 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SOX3P41225 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.89■■□□□ 1.25
SOX3P41225 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SOX3P41225 LINC01003-201ENST00000564834 1764 ntBASIC22.89■■□□□ 1.25
SOX3P41225 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
SOX3P41225 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
SOX3P41225 ECEL1P2-201ENST00000461596 1295 ntBASIC22.88■■□□□ 1.25
SOX3P41225 ABHD17AP5-201ENST00000580133 923 ntBASIC22.88■■□□□ 1.25
SOX3P41225 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
SOX3P41225 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.88■■□□□ 1.25
SOX3P41225 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SOX3P41225 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SOX3P41225 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.87■■□□□ 1.25
SOX3P41225 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SOX3P41225 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.87■■□□□ 1.25
SOX3P41225 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.87■■□□□ 1.25
SOX3P41225 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
SOX3P41225 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
SOX3P41225 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
SOX3P41225 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SOX3P41225 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.86■■□□□ 1.25
SOX3P41225 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SOX3P41225 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC22.85■■□□□ 1.25
SOX3P41225 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SOX3P41225 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC22.85■■□□□ 1.25
SOX3P41225 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SOX3P41225 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC22.85■■□□□ 1.25
SOX3P41225 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
SOX3P41225 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
SOX3P41225 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SOX3P41225 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
SOX3P41225 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SOX3P41225 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
SOX3P41225 WHAMMP3-201ENST00000611636 1609 ntBASIC22.83■■□□□ 1.25
SOX3P41225 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
SOX3P41225 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
SOX3P41225 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.82■■□□□ 1.24
SOX3P41225 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SOX3P41225 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
SOX3P41225 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SOX3P41225 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SOX3P41225 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.81■■□□□ 1.24
SOX3P41225 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms