Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SUDS3P1-201ENST00000505831 966 ntBASIC23.99■■□□□ 1.43
CACNA1AO00555 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
CACNA1AO00555 MIR4466-201ENST00000606121 54 ntBASIC23.99■■□□□ 1.43
CACNA1AO00555 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CACNA1AO00555 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CACNA1AO00555 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CACNA1AO00555 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1AO00555 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.98■■□□□ 1.43
CACNA1AO00555 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.98■■□□□ 1.43
CACNA1AO00555 AL359258.2-201ENST00000564063 1566 ntBASIC23.97■■□□□ 1.43
CACNA1AO00555 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.97■■□□□ 1.43
CACNA1AO00555 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.97■■□□□ 1.43
CACNA1AO00555 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1AO00555 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.97■■□□□ 1.43
CACNA1AO00555 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
CACNA1AO00555 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC23.96■■□□□ 1.43
CACNA1AO00555 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1AO00555 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
CACNA1AO00555 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
CACNA1AO00555 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
CACNA1AO00555 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.95■■□□□ 1.43
CACNA1AO00555 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.43
CACNA1AO00555 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1AO00555 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1AO00555 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.95■■□□□ 1.42
CACNA1AO00555 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.95■■□□□ 1.42
CACNA1AO00555 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.95■■□□□ 1.42
CACNA1AO00555 MIR3621-201ENST00000580529 85 ntBASIC23.95■■□□□ 1.42
CACNA1AO00555 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
CACNA1AO00555 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.94■■□□□ 1.42
CACNA1AO00555 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CACNA1AO00555 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CACNA1AO00555 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.93■■□□□ 1.42
CACNA1AO00555 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
CACNA1AO00555 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.93■■□□□ 1.42
CACNA1AO00555 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC23.93■■□□□ 1.42
CACNA1AO00555 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CACNA1AO00555 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.92■■□□□ 1.42
CACNA1AO00555 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CACNA1AO00555 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.92■■□□□ 1.42
CACNA1AO00555 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CACNA1AO00555 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CACNA1AO00555 AC090192.1-201ENST00000517740 490 ntBASIC23.91■■□□□ 1.42
CACNA1AO00555 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CACNA1AO00555 PARL-206ENST00000435888 1098 ntTSL 5 BASIC23.91■■□□□ 1.42
CACNA1AO00555 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.91■■□□□ 1.42
CACNA1AO00555 AL162430.1-201ENST00000480705 870 ntBASIC23.9■■□□□ 1.42
CACNA1AO00555 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CACNA1AO00555 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CACNA1AO00555 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
CACNA1AO00555 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.89■■□□□ 1.42
CACNA1AO00555 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.89■■□□□ 1.42
CACNA1AO00555 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CACNA1AO00555 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
CACNA1AO00555 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.89■■□□□ 1.42
CACNA1AO00555 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
CACNA1AO00555 MIR3960-201ENST00000583311 91 ntBASIC23.89■■□□□ 1.41
CACNA1AO00555 MIR6821-201ENST00000617625 74 ntBASIC23.88■■□□□ 1.41
CACNA1AO00555 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.88■■□□□ 1.41
CACNA1AO00555 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CACNA1AO00555 AC106739.1-201ENST00000617035 715 ntBASIC23.87■■□□□ 1.41
CACNA1AO00555 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CACNA1AO00555 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.86■■□□□ 1.41
CACNA1AO00555 AC087623.3-201ENST00000607047 1098 ntBASIC23.86■■□□□ 1.41
CACNA1AO00555 AL031432.3-201ENST00000607698 485 ntBASIC23.85■■□□□ 1.41
CACNA1AO00555 AL117332.1-201ENST00000622628 974 ntBASIC23.85■■□□□ 1.41
CACNA1AO00555 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CACNA1AO00555 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.85■■□□□ 1.41
CACNA1AO00555 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.84■■□□□ 1.41
CACNA1AO00555 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.84■■□□□ 1.41
CACNA1AO00555 AC087393.1-201ENST00000582896 145 ntBASIC23.84■■□□□ 1.41
CACNA1AO00555 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.84■■□□□ 1.41
CACNA1AO00555 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC23.83■■□□□ 1.41
CACNA1AO00555 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CACNA1AO00555 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.83■■□□□ 1.41
CACNA1AO00555 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.83■■□□□ 1.41
CACNA1AO00555 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CACNA1AO00555 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.83■■□□□ 1.41
CACNA1AO00555 AC142381.2-201ENST00000566120 298 ntBASIC23.83■■□□□ 1.41
CACNA1AO00555 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CACNA1AO00555 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CACNA1AO00555 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
CACNA1AO00555 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.82■■□□□ 1.4
CACNA1AO00555 TSPY9P-201ENST00000440215 945 ntBASIC23.82■■□□□ 1.4
CACNA1AO00555 TSPY11P-201ENST00000442607 1045 ntBASIC23.82■■□□□ 1.4
CACNA1AO00555 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
CACNA1AO00555 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.82■■□□□ 1.4
CACNA1AO00555 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CACNA1AO00555 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CACNA1AO00555 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC23.81■■□□□ 1.4
CACNA1AO00555 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CACNA1AO00555 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CACNA1AO00555 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.81■■□□□ 1.4
CACNA1AO00555 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.81■■□□□ 1.4
CACNA1AO00555 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.8■■□□□ 1.4
CACNA1AO00555 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CACNA1AO00555 AC022616.5-201ENST00000518796 181 ntBASIC23.8■■□□□ 1.4
CACNA1AO00555 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CACNA1AO00555 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CACNA1AO00555 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms