Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 BAD-207ENST00000544785 525 ntTSL 3 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 RPL30-202ENST00000396070 440 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 RPL28-209ENST00000560055 670 ntTSL 3 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 ACTL9-202ENST00000612068 1252 ntBASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 KLF4P1-201ENST00000412782 1185 ntBASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 KRT18P32-201ENST00000424695 1287 ntBASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 AC005237.2-201ENST00000434368 219 ntBASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC26.73■■□□□ 1.87
COL17A1Q9UMD9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 FALEC-201ENST00000416894 566 ntTSL 3 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 IGHV3-71-201ENST00000523324 359 ntBASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 AL158211.3-201ENST00000607385 239 ntBASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC26.72■■□□□ 1.87
COL17A1Q9UMD9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 AC092580.3-201ENST00000430932 139 ntBASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 AC079140.1-201ENST00000508039 487 ntBASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 RAB34-224ENST00000636513 888 ntTSL 5 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
COL17A1Q9UMD9 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 PGF-202ENST00000405431 666 ntTSL 5 BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC26.7■■□□□ 1.87
COL17A1Q9UMD9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms