Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 AL136038.4-201ENST00000603606 1261 ntBASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMA1Q9UHB6 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 AC112698.1-201ENST00000510299 916 ntBASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 AL023973.1-201ENST00000624619 620 ntBASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 AC138932.1-201ENST00000534164 6830 ntBASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMA1Q9UHB6 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 AC016396.2-201ENST00000562575 1417 ntBASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 LYSMD4-203ENST00000378904 2122 ntBASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 HLA-F-220ENST00000434407 884 ntBASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 BX276092.7-203ENST00000637198 1536 ntBASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMA1Q9UHB6 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 AC124067.4-201ENST00000519691 2379 ntBASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms