Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 BX088651.1-201ENST00000540551 451 ntBASIC17.67■□□□□ 0.42
SSU72Q9NP77 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.67■□□□□ 0.42
SSU72Q9NP77 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
SSU72Q9NP77 UBALD1-205ENST00000590891 2641 ntBASIC17.67■□□□□ 0.42
SSU72Q9NP77 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 KRT8P47-201ENST00000604727 1398 ntBASIC17.66■□□□□ 0.42
SSU72Q9NP77 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 KRT18P65-201ENST00000439811 1286 ntBASIC17.66■□□□□ 0.42
SSU72Q9NP77 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 FLJ38576-201ENST00000623820 2459 ntBASIC17.66■□□□□ 0.42
SSU72Q9NP77 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSU72Q9NP77 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.66■□□□□ 0.42
SSU72Q9NP77 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 AL603756.1-201ENST00000606511 2163 ntBASIC17.65■□□□□ 0.42
SSU72Q9NP77 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 CCR12P-201ENST00000446203 998 ntBASIC17.65■□□□□ 0.42
SSU72Q9NP77 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSU72Q9NP77 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
SSU72Q9NP77 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms