Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PCDH9Q9HC56 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 AC024563.2-201ENST00000603282 481 ntBASIC18.4■□□□□ 0.54
PCDH9Q9HC56 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 AC116407.2-201ENST00000613639 860 ntBASIC18.4■□□□□ 0.54
PCDH9Q9HC56 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 AC083849.1-201ENST00000615227 514 ntBASIC18.4■□□□□ 0.54
PCDH9Q9HC56 HLA-J-201ENST00000462773 1622 ntBASIC18.4■□□□□ 0.54
PCDH9Q9HC56 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 AC080080.1-201ENST00000625121 2420 ntBASIC18.4■□□□□ 0.54
PCDH9Q9HC56 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDH9Q9HC56 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.39■□□□□ 0.54
PCDH9Q9HC56 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCDH9Q9HC56 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCDH9Q9HC56 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
PCDH9Q9HC56 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 VENTXP5-201ENST00000523979 775 ntBASIC18.39■□□□□ 0.53
PCDH9Q9HC56 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDH9Q9HC56 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDH9Q9HC56 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms