Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 AC010203.1-204ENST00000548782 407 ntBASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 AL138966.2-201ENST00000621997 464 ntBASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM56Q9BRZ2 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 PCDHA12-202ENST00000613593 2588 ntBASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 KRT18P21-201ENST00000515767 1272 ntBASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 NEK4P2-201ENST00000580004 1012 ntBASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 AC141257.4-201ENST00000634557 245 ntBASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 AC136944.6-201ENST00000634818 245 ntBASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM56Q9BRZ2 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM56Q9BRZ2 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms