Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 BX842568.4-201ENST00000421222 227 ntBASIC17.31■□□□□ 0.36
LMX1AQ8TE12 MED15P5-201ENST00000423150 992 ntBASIC17.31■□□□□ 0.36
LMX1AQ8TE12 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 AC140113.2-201ENST00000604370 208 ntBASIC17.31■□□□□ 0.36
LMX1AQ8TE12 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 Z83851.2-201ENST00000609564 659 ntBASIC17.31■□□□□ 0.36
LMX1AQ8TE12 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LMX1AQ8TE12 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 AC034105.1-201ENST00000563488 319 ntBASIC17.3■□□□□ 0.36
LMX1AQ8TE12 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.3■□□□□ 0.36
LMX1AQ8TE12 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.3■□□□□ 0.36
LMX1AQ8TE12 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 MIR1233-2-201ENST00000408138 82 ntBASIC17.29■□□□□ 0.36
LMX1AQ8TE12 MIR1233-1-201ENST00000408722 82 ntBASIC17.29■□□□□ 0.36
LMX1AQ8TE12 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 UNC93B6-202ENST00000528242 690 ntBASIC17.29■□□□□ 0.36
LMX1AQ8TE12 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 AL356488.2-201ENST00000602755 427 ntBASIC17.29■□□□□ 0.36
LMX1AQ8TE12 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LMX1AQ8TE12 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms