Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.42■□□□□ 0.38
VRK3Q8IV63 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VRK3Q8IV63 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VRK3Q8IV63 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 DDX43P3-201ENST00000441064 443 ntBASIC17.41■□□□□ 0.38
VRK3Q8IV63 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 AP000867.3-201ENST00000524675 377 ntBASIC17.41■□□□□ 0.38
VRK3Q8IV63 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VRK3Q8IV63 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VRK3Q8IV63 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.4■□□□□ 0.38
VRK3Q8IV63 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.4■□□□□ 0.38
VRK3Q8IV63 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
VRK3Q8IV63 IGHV3-47-201ENST00000425060 335 ntBASIC17.4■□□□□ 0.38
VRK3Q8IV63 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 AC007967.3-201ENST00000434308 558 ntBASIC17.4■□□□□ 0.38
VRK3Q8IV63 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.4■□□□□ 0.38
VRK3Q8IV63 KRT17P6-201ENST00000453795 1220 ntBASIC17.4■□□□□ 0.38
VRK3Q8IV63 AC074051.2-201ENST00000565115 352 ntBASIC17.4■□□□□ 0.38
VRK3Q8IV63 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.4■□□□□ 0.38
VRK3Q8IV63 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.4■□□□□ 0.38
VRK3Q8IV63 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.4■□□□□ 0.38
VRK3Q8IV63 LINC00896-202ENST00000609602 2128 ntBASIC17.4■□□□□ 0.38
VRK3Q8IV63 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VRK3Q8IV63 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.4■□□□□ 0.38
VRK3Q8IV63 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
VRK3Q8IV63 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VRK3Q8IV63 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.39■□□□□ 0.38
VRK3Q8IV63 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
VRK3Q8IV63 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.39■□□□□ 0.38
VRK3Q8IV63 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 FZD10-202ENST00000539839 3282 ntBASIC17.39■□□□□ 0.37
VRK3Q8IV63 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 NSUN5P1-202ENST00000421140 1535 ntBASIC17.39■□□□□ 0.37
VRK3Q8IV63 NSUN5P2-203ENST00000457352 1529 ntBASIC17.39■□□□□ 0.37
VRK3Q8IV63 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 VENTXP7-201ENST00000475503 772 ntBASIC17.39■□□□□ 0.37
VRK3Q8IV63 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 Z69720.1-201ENST00000601483 472 ntBASIC17.39■□□□□ 0.37
VRK3Q8IV63 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 AC097374.2-201ENST00000618617 1306 ntBASIC17.39■□□□□ 0.37
VRK3Q8IV63 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.39■□□□□ 0.37
VRK3Q8IV63 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms