Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 AC139713.2-201ENST00000641328 2723 ntBASIC17.71■□□□□ 0.42
ZNF549Q6P9A3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 AC112698.1-201ENST00000510299 916 ntBASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 REXO1L11P-201ENST00000620964 1927 ntBASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 AL645608.8-201ENST00000606034 2086 ntBASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ZNF549Q6P9A3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 LINC00304-203ENST00000565008 1864 ntBASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 AL671277.2-201ENST00000458060 996 ntBASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 AC068472.1-201ENST00000474589 881 ntBASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZNF549Q6P9A3 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 Z83836.1-201ENST00000624605 1642 ntBASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZNF549Q6P9A3 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.67■□□□□ 0.42
ZNF549Q6P9A3 AC133963.1-201ENST00000504166 1679 ntBASIC17.67■□□□□ 0.42
ZNF549Q6P9A3 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF549Q6P9A3 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF549Q6P9A3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.67■□□□□ 0.42
ZNF549Q6P9A3 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF549Q6P9A3 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZNF549Q6P9A3 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.67■□□□□ 0.42
ZNF549Q6P9A3 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms