Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX4Q33E94 LINC00304-203ENST00000565008 1864 ntBASIC16.6■□□□□ 0.25
RFX4Q33E94 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RFX4Q33E94 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX4Q33E94 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX4Q33E94 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX4Q33E94 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX4Q33E94 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX4Q33E94 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX4Q33E94 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.6■□□□□ 0.25
RFX4Q33E94 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX4Q33E94 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RFX4Q33E94 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX4Q33E94 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.59■□□□□ 0.25
RFX4Q33E94 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RFX4Q33E94 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RFX4Q33E94 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX4Q33E94 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.59■□□□□ 0.25
RFX4Q33E94 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX4Q33E94 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 TSPY20P-201ENST00000450910 630 ntBASIC16.59■□□□□ 0.25
RFX4Q33E94 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.59■□□□□ 0.25
RFX4Q33E94 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.59■□□□□ 0.25
RFX4Q33E94 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX4Q33E94 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.59■□□□□ 0.25
RFX4Q33E94 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
RFX4Q33E94 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.59■□□□□ 0.25
RFX4Q33E94 AC018695.7-201ENST00000624587 2492 ntBASIC16.59■□□□□ 0.25
RFX4Q33E94 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX4Q33E94 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX4Q33E94 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
RFX4Q33E94 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX4Q33E94 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
RFX4Q33E94 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.58■□□□□ 0.25
RFX4Q33E94 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RFX4Q33E94 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RFX4Q33E94 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RFX4Q33E94 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.58■□□□□ 0.24
RFX4Q33E94 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 RPS2P55-201ENST00000397318 883 ntBASIC16.58■□□□□ 0.24
RFX4Q33E94 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 AC107956.1-201ENST00000494359 873 ntBASIC16.58■□□□□ 0.24
RFX4Q33E94 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.58■□□□□ 0.24
RFX4Q33E94 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.58■□□□□ 0.24
RFX4Q33E94 AP001412.1-201ENST00000608405 714 ntBASIC16.58■□□□□ 0.24
RFX4Q33E94 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.58■□□□□ 0.24
RFX4Q33E94 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
RFX4Q33E94 AC036111.1-201ENST00000533973 1582 ntBASIC16.58■□□□□ 0.24
RFX4Q33E94 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.58■□□□□ 0.24
RFX4Q33E94 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.58■□□□□ 0.24
RFX4Q33E94 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.58■□□□□ 0.24
RFX4Q33E94 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
RFX4Q33E94 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
RFX4Q33E94 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.58■□□□□ 0.24
RFX4Q33E94 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
RFX4Q33E94 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX4Q33E94 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
RFX4Q33E94 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.57■□□□□ 0.24
RFX4Q33E94 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
RFX4Q33E94 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.57■□□□□ 0.24
RFX4Q33E94 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.57■□□□□ 0.24
RFX4Q33E94 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.57■□□□□ 0.24
RFX4Q33E94 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.57■□□□□ 0.24
RFX4Q33E94 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
RFX4Q33E94 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RFX4Q33E94 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.57■□□□□ 0.24
RFX4Q33E94 ABHD17AP1-201ENST00000358206 933 ntBASIC16.57■□□□□ 0.24
RFX4Q33E94 CRYGFP-201ENST00000418459 633 ntBASIC16.57■□□□□ 0.24
RFX4Q33E94 AC142381.4-202ENST00000563973 229 ntBASIC16.57■□□□□ 0.24
RFX4Q33E94 AC009065.1-201ENST00000564055 1225 ntBASIC16.57■□□□□ 0.24
RFX4Q33E94 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.57■□□□□ 0.24
RFX4Q33E94 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms