Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CKS1BP61024 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC12.53□□□□□ -0.4
CKS1BP61024 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
CKS1BP61024 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CKS1BP61024 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CKS1BP61024 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC12.53□□□□□ -0.4
CKS1BP61024 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CKS1BP61024 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC12.53□□□□□ -0.4
CKS1BP61024 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.4
CKS1BP61024 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CKS1BP61024 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC12.52□□□□□ -0.4
CKS1BP61024 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CKS1BP61024 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
CKS1BP61024 ESPNP-201ENST00000270691 2015 ntBASIC12.52□□□□□ -0.4
CKS1BP61024 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CKS1BP61024 DOC2GP-204ENST00000639052 2548 ntBASIC12.52□□□□□ -0.4
CKS1BP61024 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CKS1BP61024 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CKS1BP61024 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
CKS1BP61024 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC12.52□□□□□ -0.4
CKS1BP61024 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CKS1BP61024 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CKS1BP61024 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CKS1BP61024 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.52□□□□□ -0.41
CKS1BP61024 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CKS1BP61024 CROCCP5-201ENST00000436658 830 ntBASIC12.52□□□□□ -0.41
CKS1BP61024 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC12.52□□□□□ -0.41
CKS1BP61024 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC12.52□□□□□ -0.41
CKS1BP61024 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC12.52□□□□□ -0.41
CKS1BP61024 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 VPS53-216ENST00000574029 585 ntTSL 4 BASIC12.52□□□□□ -0.41
CKS1BP61024 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC12.52□□□□□ -0.41
CKS1BP61024 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC12.52□□□□□ -0.41
CKS1BP61024 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC12.52□□□□□ -0.41
CKS1BP61024 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
CKS1BP61024 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC12.52□□□□□ -0.41
CKS1BP61024 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CKS1BP61024 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CKS1BP61024 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.41
CKS1BP61024 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CKS1BP61024 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
CKS1BP61024 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 AC099063.4-201ENST00000641099 1602 ntBASIC12.51□□□□□ -0.41
CKS1BP61024 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC12.51□□□□□ -0.41
CKS1BP61024 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC12.51□□□□□ -0.41
CKS1BP61024 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CKS1BP61024 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC12.51□□□□□ -0.41
CKS1BP61024 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CKS1BP61024 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC12.51□□□□□ -0.41
CKS1BP61024 TSPY23P-201ENST00000440136 739 ntBASIC12.51□□□□□ -0.41
CKS1BP61024 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC12.51□□□□□ -0.41
CKS1BP61024 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC12.51□□□□□ -0.41
CKS1BP61024 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC12.51□□□□□ -0.41
CKS1BP61024 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC12.51□□□□□ -0.41
CKS1BP61024 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC12.51□□□□□ -0.41
CKS1BP61024 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC12.51□□□□□ -0.41
CKS1BP61024 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CKS1BP61024 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.51□□□□□ -0.41
CKS1BP61024 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CKS1BP61024 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms