Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.76■□□□□ 0.59
LIG3P49916 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.76■□□□□ 0.59
LIG3P49916 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.76■□□□□ 0.59
LIG3P49916 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 KRT8P32-201ENST00000512863 1461 ntBASIC18.76■□□□□ 0.59
LIG3P49916 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LIG3P49916 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LIG3P49916 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LIG3P49916 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.75■□□□□ 0.59
LIG3P49916 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
LIG3P49916 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.75■□□□□ 0.59
LIG3P49916 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LIG3P49916 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 AL109659.2-201ENST00000606809 1674 ntBASIC18.75■□□□□ 0.59
LIG3P49916 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.75■□□□□ 0.59
LIG3P49916 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.75■□□□□ 0.59
LIG3P49916 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIG3P49916 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.74■□□□□ 0.59
LIG3P49916 AC008556.1-201ENST00000610908 2040 ntBASIC18.74■□□□□ 0.59
LIG3P49916 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.74■□□□□ 0.59
LIG3P49916 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.74■□□□□ 0.59
LIG3P49916 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.74■□□□□ 0.59
LIG3P49916 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.74■□□□□ 0.59
LIG3P49916 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.74■□□□□ 0.59
LIG3P49916 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.74■□□□□ 0.59
LIG3P49916 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LIG3P49916 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.74■□□□□ 0.59
LIG3P49916 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.74■□□□□ 0.59
LIG3P49916 AC092647.4-201ENST00000457211 535 ntBASIC18.74■□□□□ 0.59
LIG3P49916 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.74■□□□□ 0.59
LIG3P49916 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.74■□□□□ 0.59
LIG3P49916 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.74■□□□□ 0.59
LIG3P49916 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.74■□□□□ 0.59
LIG3P49916 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LIG3P49916 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.74■□□□□ 0.59
LIG3P49916 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
LIG3P49916 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.74■□□□□ 0.59
LIG3P49916 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIG3P49916 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.74■□□□□ 0.59
LIG3P49916 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.73■□□□□ 0.59
LIG3P49916 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.73■□□□□ 0.59
LIG3P49916 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
LIG3P49916 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.73■□□□□ 0.59
LIG3P49916 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.73■□□□□ 0.59
LIG3P49916 FAM8A6P-201ENST00000407496 1135 ntBASIC18.73■□□□□ 0.59
LIG3P49916 GCSHP2-201ENST00000560971 527 ntBASIC18.73■□□□□ 0.59
LIG3P49916 LINC01238-205ENST00000567549 1107 ntBASIC18.73■□□□□ 0.59
LIG3P49916 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.73■□□□□ 0.59
LIG3P49916 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.73■□□□□ 0.59
LIG3P49916 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.73■□□□□ 0.59
LIG3P49916 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
LIG3P49916 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms