Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.65■□□□□ 0.42
CXCL12P48061 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CXCL12P48061 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 ANO7L1-203ENST00000602586 1720 ntBASIC17.65■□□□□ 0.42
CXCL12P48061 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CXCL12P48061 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.65■□□□□ 0.42
CXCL12P48061 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 PTCHD3P3-201ENST00000403073 906 ntBASIC17.65■□□□□ 0.42
CXCL12P48061 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.65■□□□□ 0.42
CXCL12P48061 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.65■□□□□ 0.42
CXCL12P48061 DUTP2-201ENST00000519164 463 ntBASIC17.65■□□□□ 0.42
CXCL12P48061 AC023141.13-201ENST00000604991 943 ntBASIC17.65■□□□□ 0.42
CXCL12P48061 AC093512.1-201ENST00000617969 520 ntBASIC17.65■□□□□ 0.42
CXCL12P48061 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CXCL12P48061 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.65■□□□□ 0.42
CXCL12P48061 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.65■□□□□ 0.42
CXCL12P48061 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 CLDN5-201ENST00000403084 2357 ntBASIC17.65■□□□□ 0.42
CXCL12P48061 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CXCL12P48061 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CXCL12P48061 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CXCL12P48061 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.64■□□□□ 0.42
CXCL12P48061 AC005332.7-201ENST00000614046 2005 ntBASIC17.64■□□□□ 0.41
CXCL12P48061 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.64■□□□□ 0.41
CXCL12P48061 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CXCL12P48061 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.64■□□□□ 0.41
CXCL12P48061 AP002414.1-201ENST00000391405 1147 ntBASIC17.64■□□□□ 0.41
CXCL12P48061 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.64■□□□□ 0.41
CXCL12P48061 AC092474.2-201ENST00000424288 719 ntBASIC17.64■□□□□ 0.41
CXCL12P48061 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 AC025678.2-201ENST00000562061 970 ntBASIC17.64■□□□□ 0.41
CXCL12P48061 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.64■□□□□ 0.41
CXCL12P48061 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.64■□□□□ 0.41
CXCL12P48061 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.64■□□□□ 0.41
CXCL12P48061 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.64■□□□□ 0.41
CXCL12P48061 AC091812.2-201ENST00000619081 385 ntBASIC17.64■□□□□ 0.41
CXCL12P48061 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.64■□□□□ 0.41
CXCL12P48061 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CXCL12P48061 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL12P48061 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.63■□□□□ 0.41
CXCL12P48061 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.63■□□□□ 0.41
CXCL12P48061 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
CXCL12P48061 AC093010.1-201ENST00000473625 1624 ntBASIC17.63■□□□□ 0.41
CXCL12P48061 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
CXCL12P48061 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.63■□□□□ 0.41
CXCL12P48061 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.63■□□□□ 0.41
CXCL12P48061 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.63■□□□□ 0.41
CXCL12P48061 AL513210.1-201ENST00000629608 234 ntBASIC17.63■□□□□ 0.41
CXCL12P48061 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL12P48061 AC018445.3-201ENST00000624177 1945 ntBASIC17.62■□□□□ 0.41
CXCL12P48061 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.62■□□□□ 0.41
CXCL12P48061 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.62■□□□□ 0.41
CXCL12P48061 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.62■□□□□ 0.41
CXCL12P48061 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.62■□□□□ 0.41
CXCL12P48061 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.62■□□□□ 0.41
CXCL12P48061 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CXCL12P48061 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CXCL12P48061 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.62■□□□□ 0.41
CXCL12P48061 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.62■□□□□ 0.41
CXCL12P48061 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.62■□□□□ 0.41
CXCL12P48061 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.62■□□□□ 0.41
CXCL12P48061 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CXCL12P48061 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.62■□□□□ 0.41
CXCL12P48061 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms