Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.49■■□□□ 1.03
BRCA1P38398 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 AC125807.1-201ENST00000483097 614 ntBASIC21.49■■□□□ 1.03
BRCA1P38398 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
BRCA1P38398 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.49■■□□□ 1.03
BRCA1P38398 SRP9-204ENST00000619790 377 ntTSL 2 BASIC21.49■■□□□ 1.03
BRCA1P38398 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
BRCA1P38398 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
BRCA1P38398 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC21.49■■□□□ 1.03
BRCA1P38398 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 DDX43P3-201ENST00000441064 443 ntBASIC21.49■■□□□ 1.03
BRCA1P38398 GATB-205ENST00000508611 605 ntTSL 2 BASIC21.49■■□□□ 1.03
BRCA1P38398 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 TSFM-210ENST00000550559 897 ntTSL 5 BASIC21.49■■□□□ 1.03
BRCA1P38398 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.49■■□□□ 1.03
BRCA1P38398 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BRCA1P38398 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BRCA1P38398 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BRCA1P38398 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BRCA1P38398 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.48■■□□□ 1.03
BRCA1P38398 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.48■■□□□ 1.03
BRCA1P38398 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
BRCA1P38398 AL512356.2-201ENST00000546955 174 ntBASIC21.48■■□□□ 1.03
BRCA1P38398 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC21.48■■□□□ 1.03
BRCA1P38398 AL158211.3-201ENST00000607385 239 ntBASIC21.48■■□□□ 1.03
BRCA1P38398 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC21.48■■□□□ 1.03
BRCA1P38398 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.48■■□□□ 1.03
BRCA1P38398 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
BRCA1P38398 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
BRCA1P38398 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.48■■□□□ 1.03
BRCA1P38398 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BRCA1P38398 FO538757.1-201ENST00000623083 1397 ntBASIC21.48■■□□□ 1.03
BRCA1P38398 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.47■■□□□ 1.03
BRCA1P38398 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.47■■□□□ 1.03
BRCA1P38398 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC21.47■■□□□ 1.03
BRCA1P38398 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
BRCA1P38398 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.47■■□□□ 1.03
BRCA1P38398 AC100803.2-201ENST00000562459 1963 ntBASIC21.47■■□□□ 1.03
BRCA1P38398 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
BRCA1P38398 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
BRCA1P38398 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 TUBB3P1-201ENST00000405796 1332 ntBASIC21.47■■□□□ 1.03
BRCA1P38398 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.47■■□□□ 1.03
BRCA1P38398 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
BRCA1P38398 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.47■■□□□ 1.03
BRCA1P38398 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
BRCA1P38398 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
BRCA1P38398 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.47■■□□□ 1.03
BRCA1P38398 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.46■■□□□ 1.03
BRCA1P38398 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
BRCA1P38398 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
BRCA1P38398 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 BASP1P1-201ENST00000430708 665 ntBASIC21.46■■□□□ 1.03
BRCA1P38398 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC21.46■■□□□ 1.03
BRCA1P38398 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.46■■□□□ 1.03
BRCA1P38398 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.46■■□□□ 1.03
BRCA1P38398 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.46■■□□□ 1.03
BRCA1P38398 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC21.46■■□□□ 1.03
BRCA1P38398 MIR6752-201ENST00000618442 71 ntBASIC21.46■■□□□ 1.03
BRCA1P38398 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
BRCA1P38398 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
BRCA1P38398 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
BRCA1P38398 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms