Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 FAM86C2P-203ENST00000528684 1004 ntBASIC20.89■□□□□ 0.93
SCN4AP35499 CR383656.12-201ENST00000549567 513 ntBASIC20.89■□□□□ 0.93
SCN4AP35499 ACTL9-202ENST00000612068 1252 ntBASIC20.89■□□□□ 0.93
SCN4AP35499 AL157384.1-201ENST00000445995 2473 ntBASIC20.89■□□□□ 0.93
SCN4AP35499 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.89■□□□□ 0.93
SCN4AP35499 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SCN4AP35499 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SCN4AP35499 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.88■□□□□ 0.93
SCN4AP35499 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.88■□□□□ 0.93
SCN4AP35499 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC20.88■□□□□ 0.93
SCN4AP35499 AL592309.1-201ENST00000443127 649 ntBASIC20.88■□□□□ 0.93
SCN4AP35499 AL359881.2-201ENST00000602973 570 ntBASIC20.88■□□□□ 0.93
SCN4AP35499 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SCN4AP35499 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.88■□□□□ 0.93
SCN4AP35499 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.88■□□□□ 0.93
SCN4AP35499 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
SCN4AP35499 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.88■□□□□ 0.93
SCN4AP35499 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SCN4AP35499 COX5BP8-201ENST00000416911 349 ntBASIC20.88■□□□□ 0.93
SCN4AP35499 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.88■□□□□ 0.93
SCN4AP35499 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.88■□□□□ 0.93
SCN4AP35499 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.88■□□□□ 0.93
SCN4AP35499 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
SCN4AP35499 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 FO538757.1-201ENST00000623083 1397 ntBASIC20.87■□□□□ 0.93
SCN4AP35499 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.87■□□□□ 0.93
SCN4AP35499 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SCN4AP35499 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 GOLGA6L11P-201ENST00000417252 1298 ntBASIC20.87■□□□□ 0.93
SCN4AP35499 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.87■□□□□ 0.93
SCN4AP35499 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.87■□□□□ 0.93
SCN4AP35499 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.87■□□□□ 0.93
SCN4AP35499 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.87■□□□□ 0.93
SCN4AP35499 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.87■□□□□ 0.93
SCN4AP35499 STK25P1-201ENST00000585406 838 ntBASIC20.87■□□□□ 0.93
SCN4AP35499 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SCN4AP35499 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SCN4AP35499 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SCN4AP35499 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SCN4AP35499 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SCN4AP35499 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.86■□□□□ 0.93
SCN4AP35499 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.86■□□□□ 0.93
SCN4AP35499 AC005237.2-201ENST00000434368 219 ntBASIC20.86■□□□□ 0.93
SCN4AP35499 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.86■□□□□ 0.93
SCN4AP35499 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.86■□□□□ 0.93
SCN4AP35499 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC20.86■□□□□ 0.93
SCN4AP35499 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.86■□□□□ 0.93
SCN4AP35499 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC20.86■□□□□ 0.93
SCN4AP35499 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.86■□□□□ 0.93
SCN4AP35499 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SCN4AP35499 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.86■□□□□ 0.93
SCN4AP35499 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SCN4AP35499 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SCN4AP35499 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.86■□□□□ 0.93
SCN4AP35499 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SCN4AP35499 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SCN4AP35499 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 LINC00982-205ENST00000420957 435 ntBASIC20.85■□□□□ 0.93
SCN4AP35499 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SCN4AP35499 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.85■□□□□ 0.93
SCN4AP35499 AC069120.2-201ENST00000524091 540 ntBASIC20.85■□□□□ 0.93
SCN4AP35499 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.85■□□□□ 0.93
SCN4AP35499 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.85■□□□□ 0.93
SCN4AP35499 AC027307.3-201ENST00000594262 1100 ntBASIC20.85■□□□□ 0.93
SCN4AP35499 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.85■□□□□ 0.93
SCN4AP35499 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.85■□□□□ 0.93
SCN4AP35499 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms