Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHMT2P34897 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 AC134043.2-201ENST00000624206 2238 ntBASIC17.44■□□□□ 0.38
SHMT2P34897 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.44■□□□□ 0.38
SHMT2P34897 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
SHMT2P34897 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.44■□□□□ 0.38
SHMT2P34897 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.44■□□□□ 0.38
SHMT2P34897 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
SHMT2P34897 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 AC068472.1-201ENST00000474589 881 ntBASIC17.44■□□□□ 0.38
SHMT2P34897 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.44■□□□□ 0.38
SHMT2P34897 DUTP2-201ENST00000519164 463 ntBASIC17.44■□□□□ 0.38
SHMT2P34897 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.44■□□□□ 0.38
SHMT2P34897 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.44■□□□□ 0.38
SHMT2P34897 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 Z69720.1-201ENST00000601483 472 ntBASIC17.44■□□□□ 0.38
SHMT2P34897 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.44■□□□□ 0.38
SHMT2P34897 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SHMT2P34897 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHMT2P34897 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.44■□□□□ 0.38
SHMT2P34897 AC022898.2-201ENST00000616822 1312 ntBASIC17.44■□□□□ 0.38
SHMT2P34897 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SHMT2P34897 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.44■□□□□ 0.38
SHMT2P34897 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
SHMT2P34897 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SHMT2P34897 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.43■□□□□ 0.38
SHMT2P34897 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SHMT2P34897 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 AC233702.3-201ENST00000578656 1387 ntBASIC17.43■□□□□ 0.38
SHMT2P34897 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.43■□□□□ 0.38
SHMT2P34897 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.43■□□□□ 0.38
SHMT2P34897 MTCL1P1-201ENST00000446207 792 ntBASIC17.43■□□□□ 0.38
SHMT2P34897 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.43■□□□□ 0.38
SHMT2P34897 KRT18P56-201ENST00000507275 550 ntBASIC17.43■□□□□ 0.38
SHMT2P34897 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.43■□□□□ 0.38
SHMT2P34897 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.43■□□□□ 0.38
SHMT2P34897 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SHMT2P34897 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.43■□□□□ 0.38
SHMT2P34897 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SHMT2P34897 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.43■□□□□ 0.38
SHMT2P34897 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.43■□□□□ 0.38
SHMT2P34897 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.43■□□□□ 0.38
SHMT2P34897 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHMT2P34897 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.43■□□□□ 0.38
SHMT2P34897 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SHMT2P34897 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 PCDHA12-202ENST00000613593 2588 ntBASIC17.42■□□□□ 0.38
SHMT2P34897 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SHMT2P34897 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.42■□□□□ 0.38
SHMT2P34897 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SHMT2P34897 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SHMT2P34897 AP000867.3-201ENST00000524675 377 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms