Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PTPN4P29074 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.93■□□□□ 0.46
PTPN4P29074 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PTPN4P29074 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
PTPN4P29074 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTPN4P29074 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.92■□□□□ 0.46
PTPN4P29074 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.92■□□□□ 0.46
PTPN4P29074 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.92■□□□□ 0.46
PTPN4P29074 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.92■□□□□ 0.46
PTPN4P29074 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.92■□□□□ 0.46
PTPN4P29074 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
PTPN4P29074 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.92■□□□□ 0.46
PTPN4P29074 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.92■□□□□ 0.46
PTPN4P29074 AL121956.5-201ENST00000625261 221 ntBASIC17.92■□□□□ 0.46
PTPN4P29074 AP000550.4-202ENST00000639755 178 ntBASIC17.92■□□□□ 0.46
PTPN4P29074 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PTPN4P29074 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.92■□□□□ 0.46
PTPN4P29074 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN4P29074 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
PTPN4P29074 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.91■□□□□ 0.46
PTPN4P29074 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.91■□□□□ 0.46
PTPN4P29074 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
PTPN4P29074 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.91■□□□□ 0.46
PTPN4P29074 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.91■□□□□ 0.46
PTPN4P29074 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.91■□□□□ 0.46
PTPN4P29074 AC008622.2-201ENST00000617006 1229 ntBASIC17.91■□□□□ 0.46
PTPN4P29074 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
PTPN4P29074 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.91■□□□□ 0.46
PTPN4P29074 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PTPN4P29074 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN4P29074 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.9■□□□□ 0.46
PTPN4P29074 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.9■□□□□ 0.46
PTPN4P29074 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN4P29074 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 AL671277.2-201ENST00000458060 996 ntBASIC17.9■□□□□ 0.46
PTPN4P29074 AL359075.1-203ENST00000462729 1002 ntBASIC17.9■□□□□ 0.46
PTPN4P29074 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN4P29074 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN4P29074 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN4P29074 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.9■□□□□ 0.46
PTPN4P29074 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.9■□□□□ 0.46
PTPN4P29074 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PTPN4P29074 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN4P29074 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms