Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.41■□□□□ 0.86
SMARCA1P28370 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.41■□□□□ 0.86
SMARCA1P28370 TPM4P1-201ENST00000436100 807 ntBASIC20.41■□□□□ 0.86
SMARCA1P28370 EMBP1-201ENST00000458200 901 ntBASIC20.41■□□□□ 0.86
SMARCA1P28370 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.41■□□□□ 0.86
SMARCA1P28370 AF238378.1-201ENST00000526806 358 ntBASIC20.41■□□□□ 0.86
SMARCA1P28370 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.41■□□□□ 0.86
SMARCA1P28370 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.41■□□□□ 0.86
SMARCA1P28370 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.41■□□□□ 0.86
SMARCA1P28370 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
SMARCA1P28370 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMARCA1P28370 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMARCA1P28370 MYCLP1-201ENST00000372451 1075 ntBASIC20.4■□□□□ 0.86
SMARCA1P28370 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.4■□□□□ 0.86
SMARCA1P28370 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.4■□□□□ 0.86
SMARCA1P28370 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.4■□□□□ 0.86
SMARCA1P28370 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.4■□□□□ 0.86
SMARCA1P28370 KRT8P10-201ENST00000450021 1447 ntBASIC20.4■□□□□ 0.86
SMARCA1P28370 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.4■□□□□ 0.86
SMARCA1P28370 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.4■□□□□ 0.86
SMARCA1P28370 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.4■□□□□ 0.86
SMARCA1P28370 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SMARCA1P28370 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.4■□□□□ 0.86
SMARCA1P28370 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SMARCA1P28370 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
SMARCA1P28370 AC073592.4-201ENST00000623827 446 ntBASIC20.4■□□□□ 0.86
SMARCA1P28370 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMARCA1P28370 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SMARCA1P28370 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
SMARCA1P28370 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
SMARCA1P28370 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.4■□□□□ 0.86
SMARCA1P28370 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SMARCA1P28370 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SMARCA1P28370 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMARCA1P28370 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMARCA1P28370 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SMARCA1P28370 SIRPAP1-201ENST00000448467 1770 ntBASIC20.39■□□□□ 0.86
SMARCA1P28370 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
SMARCA1P28370 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMARCA1P28370 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
SMARCA1P28370 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMARCA1P28370 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
SMARCA1P28370 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SMARCA1P28370 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.39■□□□□ 0.85
SMARCA1P28370 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMARCA1P28370 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMARCA1P28370 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
SMARCA1P28370 LINC00304-203ENST00000565008 1864 ntBASIC20.39■□□□□ 0.85
SMARCA1P28370 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMARCA1P28370 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SMARCA1P28370 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SMARCA1P28370 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 SIGLEC16-201ENST00000599858 1437 ntBASIC20.38■□□□□ 0.85
SMARCA1P28370 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.38■□□□□ 0.85
SMARCA1P28370 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.38■□□□□ 0.85
SMARCA1P28370 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.38■□□□□ 0.85
SMARCA1P28370 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.38■□□□□ 0.85
SMARCA1P28370 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.38■□□□□ 0.85
SMARCA1P28370 IGHV3-52-201ENST00000519770 353 ntBASIC20.38■□□□□ 0.85
SMARCA1P28370 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
SMARCA1P28370 AC109462.3-201ENST00000573934 613 ntBASIC20.38■□□□□ 0.85
SMARCA1P28370 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
SMARCA1P28370 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
SMARCA1P28370 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
SMARCA1P28370 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.38■□□□□ 0.85
SMARCA1P28370 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SMARCA1P28370 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SMARCA1P28370 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.38■□□□□ 0.85
SMARCA1P28370 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
SMARCA1P28370 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.37■□□□□ 0.85
SMARCA1P28370 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.37■□□□□ 0.85
SMARCA1P28370 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
SMARCA1P28370 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMARCA1P28370 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
SMARCA1P28370 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
SMARCA1P28370 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms