Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.66■□□□□ 0.74
TPM1P09493 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.66■□□□□ 0.74
TPM1P09493 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.66■□□□□ 0.74
TPM1P09493 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.66■□□□□ 0.74
TPM1P09493 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.66■□□□□ 0.74
TPM1P09493 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.66■□□□□ 0.74
TPM1P09493 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.66■□□□□ 0.74
TPM1P09493 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
TPM1P09493 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
TPM1P09493 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.65■□□□□ 0.74
TPM1P09493 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TPM1P09493 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.65■□□□□ 0.74
TPM1P09493 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.65■□□□□ 0.74
TPM1P09493 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.65■□□□□ 0.74
TPM1P09493 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.65■□□□□ 0.74
TPM1P09493 AC112497.1-201ENST00000624824 639 ntBASIC19.65■□□□□ 0.74
TPM1P09493 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.65■□□□□ 0.74
TPM1P09493 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.65■□□□□ 0.74
TPM1P09493 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TPM1P09493 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.65■□□□□ 0.74
TPM1P09493 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
TPM1P09493 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.64■□□□□ 0.74
TPM1P09493 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TPM1P09493 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TPM1P09493 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.74
TPM1P09493 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.74
TPM1P09493 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.64■□□□□ 0.74
TPM1P09493 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TPM1P09493 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
TPM1P09493 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TPM1P09493 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 AC104390.1-201ENST00000555663 520 ntBASIC19.64■□□□□ 0.73
TPM1P09493 WWOX-216ENST00000569818 525 ntBASIC19.64■□□□□ 0.73
TPM1P09493 AC008687.5-201ENST00000593746 558 ntBASIC19.64■□□□□ 0.73
TPM1P09493 AP001412.1-201ENST00000608405 714 ntBASIC19.64■□□□□ 0.73
TPM1P09493 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 AL359736.2-201ENST00000621992 437 ntBASIC19.64■□□□□ 0.73
TPM1P09493 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.64■□□□□ 0.73
TPM1P09493 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.64■□□□□ 0.73
TPM1P09493 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.64■□□□□ 0.73
TPM1P09493 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.64■□□□□ 0.73
TPM1P09493 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 LINC00602-201ENST00000629776 2065 ntBASIC19.64■□□□□ 0.73
TPM1P09493 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TPM1P09493 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TPM1P09493 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
TPM1P09493 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
TPM1P09493 AC022211.2-201ENST00000585075 2527 ntBASIC19.63■□□□□ 0.73
TPM1P09493 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 AP001094.4-201ENST00000579008 2176 ntBASIC19.63■□□□□ 0.73
TPM1P09493 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.63■□□□□ 0.73
TPM1P09493 TSPY17P-201ENST00000450329 467 ntBASIC19.63■□□□□ 0.73
TPM1P09493 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.63■□□□□ 0.73
TPM1P09493 CR769767.2-201ENST00000622735 460 ntBASIC19.63■□□□□ 0.73
TPM1P09493 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms