Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC092118.2-201ENST00000613495 667 ntBASIC13.85□□□□□ -0.19
CXCL1P09341 HLA-B-256ENST00000639848 1089 ntBASIC13.85□□□□□ -0.19
CXCL1P09341 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.85□□□□□ -0.19
CXCL1P09341 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
CXCL1P09341 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.85□□□□□ -0.19
CXCL1P09341 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CXCL1P09341 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 CYP2T1P-202ENST00000641596 2535 ntBASIC13.85□□□□□ -0.19
CXCL1P09341 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC13.85□□□□□ -0.19
CXCL1P09341 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 AC092068.3-201ENST00000587894 2016 ntBASIC13.85□□□□□ -0.19
CXCL1P09341 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CXCL1P09341 AC104640.1-201ENST00000562617 2109 ntBASIC13.84□□□□□ -0.19
CXCL1P09341 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 PHGDH-209ENST00000641074 1780 ntBASIC13.84□□□□□ -0.19
CXCL1P09341 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CXCL1P09341 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 DUSP5P2-201ENST00000426873 1033 ntBASIC13.84□□□□□ -0.19
CXCL1P09341 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 OR2A1-AS1-201ENST00000462305 773 ntBASIC13.84□□□□□ -0.19
CXCL1P09341 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC13.84□□□□□ -0.19
CXCL1P09341 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC13.84□□□□□ -0.19
CXCL1P09341 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 AL160286.2-201ENST00000567150 934 ntBASIC13.84□□□□□ -0.19
CXCL1P09341 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 AC133963.1-201ENST00000504166 1679 ntBASIC13.84□□□□□ -0.19
CXCL1P09341 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC13.84□□□□□ -0.19
CXCL1P09341 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.84□□□□□ -0.19
CXCL1P09341 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CXCL1P09341 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
CXCL1P09341 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CXCL1P09341 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
CXCL1P09341 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CXCL1P09341 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CXCL1P09341 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC13.83□□□□□ -0.19
CXCL1P09341 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
CXCL1P09341 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CXCL1P09341 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CXCL1P09341 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CXCL1P09341 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC13.83□□□□□ -0.2
CXCL1P09341 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC13.83□□□□□ -0.2
CXCL1P09341 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 AC091874.3-201ENST00000512672 1195 ntBASIC13.83□□□□□ -0.2
CXCL1P09341 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC13.83□□□□□ -0.2
CXCL1P09341 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC13.83□□□□□ -0.2
CXCL1P09341 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC13.83□□□□□ -0.2
CXCL1P09341 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CXCL1P09341 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms