Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.76■□□□□ 0.59
RB1P06400 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.76■□□□□ 0.59
RB1P06400 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.76■□□□□ 0.59
RB1P06400 AC027612.4-201ENST00000605371 583 ntBASIC18.76■□□□□ 0.59
RB1P06400 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.76■□□□□ 0.59
RB1P06400 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
RB1P06400 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RB1P06400 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.76■□□□□ 0.59
RB1P06400 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.76■□□□□ 0.59
RB1P06400 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.76■□□□□ 0.59
RB1P06400 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RB1P06400 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.76■□□□□ 0.59
RB1P06400 BCAR1-209ENST00000546196 1340 ntBASIC18.75■□□□□ 0.59
RB1P06400 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.75■□□□□ 0.59
RB1P06400 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
RB1P06400 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.75■□□□□ 0.59
RB1P06400 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.75■□□□□ 0.59
RB1P06400 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 AP002414.1-201ENST00000391405 1147 ntBASIC18.75■□□□□ 0.59
RB1P06400 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.75■□□□□ 0.59
RB1P06400 TSEN15P1-201ENST00000423257 515 ntBASIC18.75■□□□□ 0.59
RB1P06400 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.75■□□□□ 0.59
RB1P06400 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.75■□□□□ 0.59
RB1P06400 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.75■□□□□ 0.59
RB1P06400 AC074386.1-202ENST00000463561 864 ntBASIC18.75■□□□□ 0.59
RB1P06400 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.75■□□□□ 0.59
RB1P06400 KRT19P2-202ENST00000557173 1012 ntBASIC18.75■□□□□ 0.59
RB1P06400 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.75■□□□□ 0.59
RB1P06400 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.75■□□□□ 0.59
RB1P06400 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.75■□□□□ 0.59
RB1P06400 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.75■□□□□ 0.59
RB1P06400 AC007064.4-201ENST00000637740 555 ntBASIC18.75■□□□□ 0.59
RB1P06400 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RB1P06400 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.74■□□□□ 0.59
RB1P06400 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.74■□□□□ 0.59
RB1P06400 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
RB1P06400 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
RB1P06400 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.74■□□□□ 0.59
RB1P06400 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
RB1P06400 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.74■□□□□ 0.59
RB1P06400 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
RB1P06400 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.74■□□□□ 0.59
RB1P06400 SPCS2P1-201ENST00000561636 679 ntBASIC18.74■□□□□ 0.59
RB1P06400 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
RB1P06400 AC010507.1-201ENST00000633895 436 ntBASIC18.74■□□□□ 0.59
RB1P06400 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
RB1P06400 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RB1P06400 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RB1P06400 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RB1P06400 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RB1P06400 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.73■□□□□ 0.59
RB1P06400 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RB1P06400 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.73■□□□□ 0.59
RB1P06400 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.73■□□□□ 0.59
RB1P06400 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.73■□□□□ 0.59
RB1P06400 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
RB1P06400 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
RB1P06400 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RB1P06400 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
RB1P06400 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
RB1P06400 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RB1P06400 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RB1P06400 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.73■□□□□ 0.59
RB1P06400 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RB1P06400 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RB1P06400 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RB1P06400 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RB1P06400 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RB1P06400 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RB1P06400 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RB1P06400 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.72■□□□□ 0.59
RB1P06400 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.72■□□□□ 0.59
RB1P06400 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms