Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
PRPF40AO75400 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.75■□□□□ 0.91
PRPF40AO75400 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.75■□□□□ 0.91
PRPF40AO75400 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.75■□□□□ 0.91
PRPF40AO75400 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
PRPF40AO75400 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.74■□□□□ 0.91
PRPF40AO75400 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
PRPF40AO75400 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PRPF40AO75400 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
PRPF40AO75400 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.74■□□□□ 0.91
PRPF40AO75400 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
PRPF40AO75400 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.74■□□□□ 0.91
PRPF40AO75400 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.74■□□□□ 0.91
PRPF40AO75400 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.74■□□□□ 0.91
PRPF40AO75400 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC20.74■□□□□ 0.91
PRPF40AO75400 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PRPF40AO75400 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PRPF40AO75400 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.74■□□□□ 0.91
PRPF40AO75400 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.73■□□□□ 0.91
PRPF40AO75400 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PRPF40AO75400 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PRPF40AO75400 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
PRPF40AO75400 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.73■□□□□ 0.91
PRPF40AO75400 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PRPF40AO75400 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PRPF40AO75400 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
PRPF40AO75400 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.73■□□□□ 0.91
PRPF40AO75400 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
PRPF40AO75400 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC20.73■□□□□ 0.91
PRPF40AO75400 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PRPF40AO75400 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.73■□□□□ 0.91
PRPF40AO75400 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PRPF40AO75400 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.72■□□□□ 0.91
PRPF40AO75400 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
PRPF40AO75400 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.72■□□□□ 0.91
PRPF40AO75400 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PRPF40AO75400 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.72■□□□□ 0.91
PRPF40AO75400 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
PRPF40AO75400 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.72■□□□□ 0.91
PRPF40AO75400 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.72■□□□□ 0.91
PRPF40AO75400 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.72■□□□□ 0.91
PRPF40AO75400 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.72■□□□□ 0.91
PRPF40AO75400 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PRPF40AO75400 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.72■□□□□ 0.91
PRPF40AO75400 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.72■□□□□ 0.91
PRPF40AO75400 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PRPF40AO75400 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 AGGF1P2-201ENST00000426656 2106 ntBASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms