Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB3O15347 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 PHGDH-209ENST00000641074 1780 ntBASIC14.37□□□□□ -0.11
HMGB3O15347 AL118508.1-201ENST00000613502 2345 ntBASIC14.37□□□□□ -0.11
HMGB3O15347 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 PCDH8P1-201ENST00000428983 2773 ntBASIC14.37□□□□□ -0.11
HMGB3O15347 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
HMGB3O15347 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 AC120498.8-201ENST00000614275 531 ntBASIC14.37□□□□□ -0.11
HMGB3O15347 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HMGB3O15347 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
HMGB3O15347 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 CICP6-201ENST00000457191 2729 ntBASIC14.37□□□□□ -0.11
HMGB3O15347 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGB3O15347 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HMGB3O15347 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGB3O15347 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 LINC00602-201ENST00000629776 2065 ntBASIC14.37□□□□□ -0.11
HMGB3O15347 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.37□□□□□ -0.11
HMGB3O15347 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
HMGB3O15347 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGB3O15347 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HMGB3O15347 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.36□□□□□ -0.11
HMGB3O15347 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC14.36□□□□□ -0.11
HMGB3O15347 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.36□□□□□ -0.11
HMGB3O15347 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 METTL26-203ENST00000397664 604 ntTSL 2 BASIC14.36□□□□□ -0.11
HMGB3O15347 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HMGB3O15347 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
HMGB3O15347 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 TP73-201ENST00000346387 4854 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HMGB3O15347 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGB3O15347 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGB3O15347 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGB3O15347 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
HMGB3O15347 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 GMCL1P1-201ENST00000463439 1581 ntBASIC14.35□□□□□ -0.11
HMGB3O15347 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 AC079328.2-201ENST00000561241 3354 ntBASIC14.35□□□□□ -0.11
HMGB3O15347 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGB3O15347 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGB3O15347 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC14.35□□□□□ -0.11
HMGB3O15347 MNT-208ENST00000575394 606 ntTSL 4 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms