Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.07■□□□□ 0.32
CDX4O14627 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.07■□□□□ 0.32
CDX4O14627 AC068137.2-201ENST00000605408 478 ntBASIC17.07■□□□□ 0.32
CDX4O14627 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX4O14627 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CDX4O14627 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX4O14627 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.07■□□□□ 0.32
CDX4O14627 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CDX4O14627 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.06■□□□□ 0.32
CDX4O14627 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CDX4O14627 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.06■□□□□ 0.32
CDX4O14627 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.06■□□□□ 0.32
CDX4O14627 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.06■□□□□ 0.32
CDX4O14627 DUX4L27-201ENST00000554796 1261 ntBASIC17.06■□□□□ 0.32
CDX4O14627 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.06■□□□□ 0.32
CDX4O14627 AL353135.1-201ENST00000606729 504 ntBASIC17.06■□□□□ 0.32
CDX4O14627 AC019129.2-201ENST00000609837 1235 ntBASIC17.06■□□□□ 0.32
CDX4O14627 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.06■□□□□ 0.32
CDX4O14627 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CDX4O14627 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CDX4O14627 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX4O14627 AC097637.2-201ENST00000624096 1997 ntBASIC17.06■□□□□ 0.32
CDX4O14627 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CDX4O14627 AC018445.3-201ENST00000624177 1945 ntBASIC17.06■□□□□ 0.32
CDX4O14627 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.05■□□□□ 0.32
CDX4O14627 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.05■□□□□ 0.32
CDX4O14627 DDX43P3-201ENST00000441064 443 ntBASIC17.05■□□□□ 0.32
CDX4O14627 CXCL1P1-201ENST00000502804 216 ntBASIC17.05■□□□□ 0.32
CDX4O14627 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.05■□□□□ 0.32
CDX4O14627 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.05■□□□□ 0.32
CDX4O14627 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.05■□□□□ 0.32
CDX4O14627 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDX4O14627 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
CDX4O14627 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.05■□□□□ 0.32
CDX4O14627 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.05■□□□□ 0.32
CDX4O14627 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CDX4O14627 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CDX4O14627 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX4O14627 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX4O14627 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.04■□□□□ 0.32
CDX4O14627 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CDX4O14627 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX4O14627 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.04■□□□□ 0.32
CDX4O14627 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CDX4O14627 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.04■□□□□ 0.32
CDX4O14627 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.04■□□□□ 0.32
CDX4O14627 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX4O14627 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.04■□□□□ 0.32
CDX4O14627 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX4O14627 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
CDX4O14627 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CDX4O14627 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX4O14627 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
CDX4O14627 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.04■□□□□ 0.32
CDX4O14627 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX4O14627 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.04■□□□□ 0.32
CDX4O14627 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX4O14627 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms