Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL023806.1-201ENST00000603994 1649 ntBASIC14.46□□□□□ -0.09
FOXA2Q9Y261 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 AL049597.2-201ENST00000565575 961 ntBASIC14.46□□□□□ -0.09
FOXA2Q9Y261 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA2Q9Y261 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA2Q9Y261 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA2Q9Y261 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
FOXA2Q9Y261 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA2Q9Y261 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
FOXA2Q9Y261 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.1
FOXA2Q9Y261 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA2Q9Y261 AC133963.1-201ENST00000504166 1679 ntBASIC14.46□□□□□ -0.1
FOXA2Q9Y261 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA2Q9Y261 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 PP12613-201ENST00000424958 2230 ntBASIC14.45□□□□□ -0.1
FOXA2Q9Y261 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 STARP1-201ENST00000397973 869 ntBASIC14.45□□□□□ -0.1
FOXA2Q9Y261 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 RASA4DP-201ENST00000460726 1199 ntBASIC14.45□□□□□ -0.1
FOXA2Q9Y261 AC063952.2-201ENST00000498792 1227 ntBASIC14.45□□□□□ -0.1
FOXA2Q9Y261 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 AC022616.7-201ENST00000525383 220 ntBASIC14.45□□□□□ -0.1
FOXA2Q9Y261 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 FZD10-202ENST00000539839 3282 ntBASIC14.45□□□□□ -0.1
FOXA2Q9Y261 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 AC141586.5-201ENST00000624546 2050 ntBASIC14.45□□□□□ -0.1
FOXA2Q9Y261 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA2Q9Y261 AL355312.1-201ENST00000407115 2176 ntBASIC14.44□□□□□ -0.1
FOXA2Q9Y261 AC108860.2-201ENST00000562760 2183 ntBASIC14.44□□□□□ -0.1
FOXA2Q9Y261 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 AL138688.1-201ENST00000624851 1594 ntBASIC14.44□□□□□ -0.1
FOXA2Q9Y261 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 AL157888.1-201ENST00000631930 593 ntBASIC14.44□□□□□ -0.1
FOXA2Q9Y261 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA2Q9Y261 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms