Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
SHROOM4Q9ULL8 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC33.7■■■□□ 2.99
SHROOM4Q9ULL8 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.98
SHROOM4Q9ULL8 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC33.7■■■□□ 2.98
SHROOM4Q9ULL8 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC33.7■■■□□ 2.98
SHROOM4Q9ULL8 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 HLA-J-202ENST00000469281 1241 ntBASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC33.69■■■□□ 2.98
SHROOM4Q9ULL8 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC33.68■■■□□ 2.98
SHROOM4Q9ULL8 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 AC073592.3-201ENST00000625118 1834 ntBASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 AL078644.1-201ENST00000609881 752 ntBASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC33.67■■■□□ 2.98
SHROOM4Q9ULL8 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 AC087289.5-201ENST00000586076 3175 ntBASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 STOM-202ENST00000347359 870 ntTSL 2 BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 PTMS-202ENST00000389462 773 ntTSL 2 BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 AC093028.1-201ENST00000622998 982 ntBASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC33.66■■■□□ 2.98
SHROOM4Q9ULL8 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 KLK8-202ENST00000320838 456 ntTSL 5 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC33.65■■■□□ 2.98
SHROOM4Q9ULL8 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 AC092865.6-201ENST00000642101 219 ntBASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
SHROOM4Q9ULL8 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC33.63■■■□□ 2.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms