Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 AP003733.1-201ENST00000491725 852 ntBASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 AC006011.2-201ENST00000621313 1158 ntBASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS29Q9UBQ0 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 HBZP1-201ENST00000354915 429 ntBASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 IGHGP-201ENST00000390555 1178 ntBASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 KRT18P38-201ENST00000449496 1282 ntBASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS29Q9UBQ0 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 DDX43P3-201ENST00000441064 443 ntBASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 AL359075.1-203ENST00000462729 1002 ntBASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 KRT8P47-201ENST00000604727 1398 ntBASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS29Q9UBQ0 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 PKD1P1-201ENST00000458669 6805 ntBASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VPS29Q9UBQ0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms