Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 FAM220CP-201ENST00000395253 831 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 KRT18P67-201ENST00000432816 1264 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 ABCD1P5-201ENST00000445663 754 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 SCARNA2-201ENST00000458748 420 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 DUTP2-201ENST00000519164 463 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 AP001005.1-201ENST00000571755 1248 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 AL773604.1-201ENST00000617417 272 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRFN1Q9P244 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LRFN1Q9P244 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LRFN1Q9P244 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LRFN1Q9P244 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRFN1Q9P244 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.36■□□□□ 0.21
LRFN1Q9P244 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.36■□□□□ 0.21
LRFN1Q9P244 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRFN1Q9P244 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRFN1Q9P244 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 AL096828.2-201ENST00000567259 1965 ntBASIC16.35■□□□□ 0.21
LRFN1Q9P244 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 FGFR3P6-201ENST00000457012 610 ntBASIC16.35■□□□□ 0.21
LRFN1Q9P244 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 AC073648.2-201ENST00000510116 352 ntBASIC16.35■□□□□ 0.21
LRFN1Q9P244 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 AP005117.1-201ENST00000584346 1413 ntBASIC16.35■□□□□ 0.21
LRFN1Q9P244 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LRFN1Q9P244 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LRFN1Q9P244 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 AC007967.3-201ENST00000434308 558 ntBASIC16.34■□□□□ 0.21
LRFN1Q9P244 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms