Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
UPF3BQ9BZI7 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UPF3BQ9BZI7 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
UPF3BQ9BZI7 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
UPF3BQ9BZI7 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC21.3■■□□□ 1
UPF3BQ9BZI7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.3■■□□□ 1
UPF3BQ9BZI7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.3■■□□□ 1
UPF3BQ9BZI7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 KRT8P47-201ENST00000604727 1398 ntBASIC21.3■■□□□ 1
UPF3BQ9BZI7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.3■■□□□ 1
UPF3BQ9BZI7 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 HLA-F-220ENST00000434407 884 ntBASIC21.29■■□□□ 1
UPF3BQ9BZI7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 KRT18P38-201ENST00000449496 1282 ntBASIC21.29■■□□□ 1
UPF3BQ9BZI7 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 AC004263.2-201ENST00000617183 678 ntBASIC21.29■■□□□ 1
UPF3BQ9BZI7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.29■■□□□ 1
UPF3BQ9BZI7 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 AC022898.2-201ENST00000616822 1312 ntBASIC21.29■■□□□ 1
UPF3BQ9BZI7 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPF3BQ9BZI7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 BCL2-203ENST00000589955 5011 ntBASIC21.28■■□□□ 1
UPF3BQ9BZI7 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 STARP1-201ENST00000397973 869 ntBASIC21.28■■□□□ 1
UPF3BQ9BZI7 BX664615.1-201ENST00000443558 458 ntBASIC21.28■■□□□ 1
UPF3BQ9BZI7 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 AL031432.5-201ENST00000641059 760 ntBASIC21.28■■□□□ 1
UPF3BQ9BZI7 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.28■■□□□ 1
UPF3BQ9BZI7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPF3BQ9BZI7 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 AC006011.2-201ENST00000621313 1158 ntBASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms