Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 AC079602.3-201ENST00000623931 403 ntBASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 LINC00602-201ENST00000629776 2065 ntBASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TRIM54Q9BYV2 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM54Q9BYV2 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
TRIM54Q9BYV2 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
TRIM54Q9BYV2 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.64■□□□□ 0.42
TRIM54Q9BYV2 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
TRIM54Q9BYV2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
TRIM54Q9BYV2 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
TRIM54Q9BYV2 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 HLA-F-220ENST00000434407 884 ntBASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 ZNF444P1-201ENST00000559497 298 ntBASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM54Q9BYV2 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 AC006011.2-201ENST00000621313 1158 ntBASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM54Q9BYV2 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 AC132938.6-201ENST00000623828 1655 ntBASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM54Q9BYV2 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms