Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 MIR940-201ENST00000401276 94 ntBASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 SPDYE21P-201ENST00000413323 827 ntBASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 AC104109.2-201ENST00000602919 1418 ntBASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 AC103564.2-201ENST00000432853 1299 ntBASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 AL353593.2-201ENST00000602529 1483 ntBASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.96■□□□□ 0.63
PAAF1Q9BRP4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
PAAF1Q9BRP4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 KRT18P58-201ENST00000527480 1120 ntBASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 AC145285.3-201ENST00000564603 959 ntBASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 AC019129.2-201ENST00000609837 1235 ntBASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 AL022326.1-202ENST00000641533 845 ntBASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.95■□□□□ 0.62
PAAF1Q9BRP4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 SIGLEC16-201ENST00000599858 1437 ntBASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 AC034105.1-201ENST00000563488 319 ntBASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PAAF1Q9BRP4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms