Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC011676.5-201ENST00000624864 2660 ntBASIC15.6■□□□□ 0.09
NKX3-1Q99801 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
NKX3-1Q99801 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
NKX3-1Q99801 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 AC079328.2-201ENST00000561241 3354 ntBASIC15.59■□□□□ 0.09
NKX3-1Q99801 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 CA15P1-201ENST00000481698 905 ntBASIC15.59■□□□□ 0.09
NKX3-1Q99801 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 AC133561.5-201ENST00000635547 218 ntBASIC15.59■□□□□ 0.09
NKX3-1Q99801 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 AC132938.6-201ENST00000623828 1655 ntBASIC15.59■□□□□ 0.09
NKX3-1Q99801 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
NKX3-1Q99801 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
NKX3-1Q99801 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
NKX3-1Q99801 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NKX3-1Q99801 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
NKX3-1Q99801 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.09
NKX3-1Q99801 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.58■□□□□ 0.09
NKX3-1Q99801 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NKX3-1Q99801 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
NKX3-1Q99801 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 SIRPAP1-201ENST00000448467 1770 ntBASIC15.58■□□□□ 0.08
NKX3-1Q99801 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 AC211429.1-201ENST00000415277 523 ntBASIC15.58■□□□□ 0.08
NKX3-1Q99801 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 AP000525.1-201ENST00000608286 694 ntBASIC15.58■□□□□ 0.08
NKX3-1Q99801 AL023803.3-201ENST00000615559 522 ntBASIC15.58■□□□□ 0.08
NKX3-1Q99801 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.58■□□□□ 0.08
NKX3-1Q99801 NKILA-202ENST00000614771 2598 ntBASIC15.58■□□□□ 0.08
NKX3-1Q99801 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NKX3-1Q99801 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms